Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n12f
         (624 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.              34   0.47 
AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    31   4.4  

>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
          Length = 2448

 Score = 33.9 bits (74), Expect = 0.47
 Identities = 42/171 (24%), Positives = 66/171 (38%)
 Frame = +3

Query: 102  PTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI 281
            PT  T+ W+ S T    +  TT   + ++ Y       S+  + T    TT  T  S P 
Sbjct: 2240 PTQSTSSWQKSRTTTLVTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTSTT--SVPT 2297

Query: 282  NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 461
                  P+T+   V   S+  ++  + +S  T++T S+         T +     T RT 
Sbjct: 2298 TSTISGPKTTPSPVPTTSTTSAATTSTISAPTTSTTSVPGTTPSPVLTTSTTSAPTTRTT 2357

Query: 462  QARESAGS*SLCGXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTAS 614
             A   AG+ S  G           ++   T    SA T + T  P+ ST S
Sbjct: 2358 SA-SPAGTTSGPGNTPSPVPTTSTISAPTTSI-TSAPTTSTTSAPTSSTTS 2406


>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 267 WSTPINFGSRAPRTSSGIVSQLSSDLSSPKT-RLSLC 374
           WST    G R   +++   SQL   +SSPKT R+S+C
Sbjct: 57  WSTRAAAGMRPASSATAASSQLEPRVSSPKTIRISVC 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,067,958
Number of Sequences: 237096
Number of extensions: 1494042
Number of successful extensions: 4160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4158
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)