Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n11r
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    28   1.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.0  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +3

Query: 306 SIYRFKLEQQCFLLITHKLLSDAFMFLTSIKVVFLLNKTSLII 434
           S YRF L+ + F+L +H+L S     L +++   L N+TS+++
Sbjct: 557 SCYRF-LQIRSFVLTSHQLTSWGCPLLKALENCHLQNQTSVVV 598


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 321  KLEQQCFLLITHKLLSDAFMFLTSIKVVFLLNKTSLIIDLFVNINNPIRE*SV 479
            +++Q+ FLL+T  LL      +       ++N+T  +I++  N  +  R+ SV
Sbjct: 1837 RIDQRTFLLVTVVLLESNIKQIILSSPYSIVNRTKEVIEVVCNDRSGHRQSSV 1889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,989
Number of Sequences: 5004
Number of extensions: 40529
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)