Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n11f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    28   1.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.7  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 271 SIYRFKLEQQCFLLITHKLLSDAFMFLTSIKVVFLLNKTSLII 143
           S YRF L+ + F+L +H+L S     L +++   L N+TS+++
Sbjct: 557 SCYRF-LQIRSFVLTSHQLTSWGCPLLKALENCHLQNQTSVVV 598


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 256  KLEQQCFLLITHKLLSDAFMFLTSIKVVFLLNKTSLIIDLFVNINNPIRE*SV 98
            +++Q+ FLL+T  LL      +       ++N+T  +I++  N  +  R+ SV
Sbjct: 1837 RIDQRTFLLVTVVLLESNIKQIILSSPYSIVNRTKEVIEVVCNDRSGHRQSSV 1889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,186
Number of Sequences: 5004
Number of extensions: 43134
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)