Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n11f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.79 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.79 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 595 FIQHKINNVHKLYQIQQSLSMFYFFD 518
           FI  K ++ HKL +I + L  FY  D
Sbjct: 519 FIGPKYDSHHKLIEIPEDLKYFYEID 544


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 595 FIQHKINNVHKLYQIQQSLSMFYFFD 518
           FI  K ++ HKL +I + L  FY  D
Sbjct: 519 FIGPKYDSHHKLIEIPEDLKYFYEID 544


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 193 LTSIKVVFLLNKTSLIIDLFVNI 125
           LTS  V  LL  +S +++LF+++
Sbjct: 118 LTSENVEILLEHSSKLVELFLSL 140


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -2

Query: 169 LLNKTSLIIDLFVNINNPIR 110
           +LN  ++ +D +++I +P+R
Sbjct: 113 ILNLCAISLDRYIHIKDPLR 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,568
Number of Sequences: 438
Number of extensions: 3104
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)