Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n10f
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    32   0.067
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    31   0.15 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.62 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    29   0.62 
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    27   1.9  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   3.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.3  
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera...    26   4.4  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    26   4.4  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   5.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   5.8  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   5.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   7.7  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.9 bits (69), Expect = 0.067
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 330  IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 509
            + SE+T   +  T E     +E+    RE  I  LRS L D  + VE  +   E  + E+
Sbjct: 974  LASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKEL 1033

Query: 510  YKAIED 527
             K +ED
Sbjct: 1034 AKQLED 1039



 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 357  IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEK 473
            I+A +  L A+ E  +E+ E  +NE   R+K+  E  +K
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQK 1630


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 14/71 (19%), Positives = 36/71 (50%)
 Frame = +3

Query: 345 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 524
           T N I++ +    +  + HEE  +    ELR++++++++  E+ ++       E+Y+   
Sbjct: 85  TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKKT 144

Query: 525 DKMTTAADKRD 557
                 ++K+D
Sbjct: 145 ALEIDLSEKKD 155


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 75   AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 254
            A+  ETKST     ++  GG A    +A P  +P P    +P   P+ E +++       
Sbjct: 867  AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPAT 923

Query: 255  RRRS 266
            R +S
Sbjct: 924  RPKS 927


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 233 EAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE*LH 358
           EAE   R +  LG    G+HCSE G      P P+     LH
Sbjct: 320 EAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPEELGIWLH 361


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 363 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIEDKMT 536
           A +E      + ++E +EA +NE R  L+  LEG ++    L++  Q  + YK  E + T
Sbjct: 5   AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 339 EQTNNFIVATKEA-LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 506
           +Q     VA     ++A +E    K E + + + SR+K   + +E TRL  + Q  E
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIE 516


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 372 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 494
           E L  K+++  ++++  INEL  R+K +   V +   T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 24   SSDAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 146
            S D   L   L R +   +E E  ++  +C E  K  L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574


>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
           formyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 129 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAE 251
           G + + VI A   G P+  +      T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
          translocase complex subunit Tim23|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 69 LLTDRDFEPAELRPTITTDKPI 4
          +L+  +F+PA+L P    DKP+
Sbjct: 33 ILSGSEFDPAKLHPLADLDKPL 54


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 198 PEKTPSVEEIQEKLKAAEERRRSLE 272
           PE TP+VE++ E L    E R SL+
Sbjct: 301 PESTPAVEKVSENL--GSETRESLQ 323


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 417  AYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRD 557
            A IN+  ++  + L G+E T   LE+ +AE    I+D +  A  K+D
Sbjct: 949  AQINDHLAQRGNMLGGIENTMDDLEEMSAEWANEIKDSL--AGTKKD 993


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 183 RRADSPEKTPSVEEIQEKLK 242
           RRAD PE+TPS    ++ L+
Sbjct: 21  RRADRPEETPSSSVYEQNLR 40


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/44 (20%), Positives = 25/44 (56%)
 Frame = +3

Query: 423 INELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKR 554
           + E +  ++  +EG++   + L  + +E+  ++E ++TT  + R
Sbjct: 407 LKERQVAVRARIEGIKAHEMFLNNRVSEINSSLEKQLTTQKELR 450


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 336 SEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 515
           SEQT     A  + +  K    E   E     L++  KD+   ++K    LE++   + K
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450

Query: 516 AI 521
            I
Sbjct: 451 EI 452


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 147 VILAEPVGVPVPRRADSPEKTPSVEEIQEKL 239
           V L +P+  P P  A+S + T S E++  +L
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDVAWQL 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,877
Number of Sequences: 5004
Number of extensions: 28741
Number of successful extensions: 165
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)