Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n10f
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 34 0.068
11_06_0289 - 21969248-21973516 33 0.16
11_06_0185 + 21018045-21022307 33 0.16
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 1.5
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 2.6
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081... 29 2.6
03_01_0069 + 549787-549791,550033-550303,550405-552201 29 3.4
02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250 29 3.4
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 3.4
12_02_0851 + 23668618-23670639 28 4.5
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 28 4.5
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 28 4.5
01_03_0001 + 11500567-11500696,11503312-11503397,11503515-115040... 28 4.5
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 28 5.9
12_01_0963 + 9608858-9609538 27 7.8
11_08_0084 + 28260647-28262575 27 7.8
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 27 7.8
08_01_0056 + 379270-379803 27 7.8
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 7.8
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 7.8
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 27 7.8
03_05_0048 + 20258561-20259346 27 7.8
02_05_0433 - 28939817-28940146 27 7.8
>07_01_0463 + 3502708-3503535
Length = 275
Score = 34.3 bits (75), Expect = 0.068
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +3
Query: 339 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 509
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238
Query: 510 YKAIE 524
K IE
Sbjct: 239 EKGIE 243
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 372 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 521
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 372 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 521
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 308 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 451
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 174 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLE 272
P PR ++ KTP + E++E +++ +ER ++LE
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLE 176
>01_05_0606 -
23607170-23607568,23607738-23607941,23608035-23608113,
23608371-23608430,23608514-23608611,23608703-23608891,
23610670-23611368
Length = 575
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 557 VTLVGSCGHLIFDGLVHFRGLLFQGQPGLLNTLKMILETGAQLVDVGLAFFLVGL-HLGV 381
+T+ G CG L+ + G+ G PG NT A L VGL +VG+ + G+
Sbjct: 453 LTIFGGCG-LVLSIIAGLFGINVDGIPGAENTPYAFALFSALLFLVGLLLIIVGIVYFGL 511
Query: 380 ESLLGGDDEV 351
+ + D++V
Sbjct: 512 QKPI-SDEQV 520
>03_01_0069 + 549787-549791,550033-550303,550405-552201
Length = 690
Score = 28.7 bits (61), Expect = 3.4
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 339 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLE-GVEKTRLTLEQQTAEVYK 515
E+ +VA K+ LDA H+E E R RL LE ++ +L LE EV K
Sbjct: 238 EELTAELVALKKELDASHHAHDEAEEK-----RMRLAQVLEQDKDQWQLVLEVSEQEV-K 291
Query: 516 AIEDKMTTAAD 548
+ + + AAD
Sbjct: 292 KLRNSLIAAAD 302
>02_05_0527 + 29773528-29773771,29774785-29775141,29775228-29775250
Length = 207
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 479 PGLLNTLKMILETGAQLVDVGLAFFLVGLHLGVESLL 369
PGL+ TLKM GA VG GL++GVE L+
Sbjct: 143 PGLIRTLKMCGSYGATFAAVG------GLYIGVEQLV 173
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 333 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 467
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>12_02_0851 + 23668618-23670639
Length = 673
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 556 SRLSAAVVILSSMALYTSAVCCSRVNLVFS 467
++ ++AV IL + LY +A+C +V+ +FS
Sbjct: 358 AKRTSAVDILQAYQLYMAAICFKKVSFIFS 387
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 537 WSSYLRWPCTLPRSAVPGSTWSSQHPQD 454
W Y+ P + VPGS W S HP D
Sbjct: 1700 WQPYMNAPSS---EFVPGSAWPSNHPVD 1724
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 369 KEALDAKMETHEEKREAYINELRSRLK--DHLEGVEK--TRLTLEQQTAEVYKAIEDKMT 536
K+ L+AK+ E+KR + + + +SRL D L K L +++ E+ +E ++
Sbjct: 98 KKRLEAKLVAAEQKRLSLLAKEQSRLAKLDELRQAAKNDAELRFKKEREELGMKVESRVR 157
Query: 537 TAADKRDE 560
A +KR +
Sbjct: 158 QAEEKRTQ 165
>01_03_0001 +
11500567-11500696,11503312-11503397,11503515-11504097,
11504242-11504474
Length = 343
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +3
Query: 339 EQTNNFIVATKEALDAK---METHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 509
+Q F A KE L + T KR +NE L++ ++K RL+L++QT+ V
Sbjct: 26 QQNAKFSEAYKEELSRSGKVVPTKLLKRLKSMNETGLTLQNISSRLQKYRLSLKRQTSHV 85
Query: 510 YKAIEDKMTTAA 545
++ TTA+
Sbjct: 86 DQSTSTDSTTAS 97
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 384 AKMETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 506
A+ E++ K + N S L++H++ +EKT +T Q++ E
Sbjct: 83 AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125
>12_01_0963 + 9608858-9609538
Length = 226
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 356 HRRHQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*GC 466
HRRHQGG RR PR + R A + + G GC
Sbjct: 183 HRRHQGGRRR----PRLEVRAEAASAMVVANGVVGGC 215
>11_08_0084 + 28260647-28262575
Length = 642
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 556 SRLSAAVVILSSMALYTSAVCCSRVNLVFS 467
S+ ++ V L + LY A CC +V VFS
Sbjct: 328 SQRTSVVDFLKAYRLYMEACCCKKVAFVFS 357
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 192 DSPEKTPSVEEIQEKLKAAEERRRSLE 272
+SPE P + E+ + L+ EE RRS+E
Sbjct: 515 NSPELRPKMSEVTQILQENEEDRRSVE 541
>08_01_0056 + 379270-379803
Length = 177
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 356 HRRHQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*GC 466
HRRHQGG RR PR + R A + + G GC
Sbjct: 134 HRRHQGGRRR----PRLEVRAEAASAMVVANGVVGGC 166
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 284 GRHCSEDGQD---RGGVPHPQRADE*LHRRHQGGSRRQDGDP 400
GRH GQ RGG PH QRA R GG Q G P
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKP 53
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 348 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 455
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 369 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 524
KEA A++ EE+++ + E L++ + +E ++ + TAEV++ ++
Sbjct: 259 KEAEKAEVLKEEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQ 310
>03_05_0048 + 20258561-20259346
Length = 261
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 215 RRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE 349
+RR R GS E G+ GR E+G+ GG P P+R E
Sbjct: 133 KRRSDRGRGGSCEAEGGDGA--TGRRSGEEGEAAGGRPAPEREKE 175
>02_05_0433 - 28939817-28940146
Length = 109
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 339 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKA 518
EQ + V +EAL E H ++R A + + + ++ +E+ RL LEQ E +
Sbjct: 29 EQQHRLDVRRQEAL----ERHAQERAA----IEQQWRQSMQALERERLMLEQAWMEREEQ 80
Query: 519 IEDKMTTAADKRDE 560
+ A++RDE
Sbjct: 81 RRVREEARAERRDE 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,443
Number of Sequences: 37544
Number of extensions: 247400
Number of successful extensions: 999
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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