Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n10f
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.8  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   2.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
 Frame = +3

Query: 402 EEKREAYINELRSRLKDHLEGV---------EKTRLTLEQQTAEVYKAIEDK 530
           E+K  + + +  S+L D LE V         E  +LTL Q+TA+ +K ++DK
Sbjct: 354 EKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTL-QETADAFKDLQDK 404



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 81  PWLPLLTDR 55
           PWLPLL +R
Sbjct: 545 PWLPLLRNR 553


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 431 LVDVGLAFFLVGLHLGVESLLGGDDEVI 348
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 431 LVDVGLAFFLVGLHLGVESLLGGDDEVI 348
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 17  LMDSDVIFVTINYRLGILGFLSTEDEVV 44


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 431 LVDVGLAFFLVGLHLGVESLLGGDDEVI 348
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 194 LTRKDSFRRRDPREAEGSRRE 256
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 558 RHACRQLWSSYLRWPCTLPRSAVPGSTWSSQH 463
           RH  R+ W +    P   P+S +P  T  S +
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQTGLSPY 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,322
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)