Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n09f
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 222 2e-58
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 215 2e-56
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 30 1.6
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 2.8
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 29 3.7
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 6.5
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 6.5
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 222 bits (542), Expect = 2e-58
Identities = 110/172 (63%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Frame = +3
Query: 39 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 218
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 219 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 395
RR+ GGVGR AQAK + QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQV
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 396 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKS 551
N+A RRRTYRAHGRINPYMSSPCHIE+ LSE+E+ V + P A+K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK-EPESQIAARKA 171
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 215 bits (526), Expect = 2e-56
Identities = 110/183 (60%), Positives = 131/183 (71%), Gaps = 13/183 (7%)
Frame = +3
Query: 39 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 182
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 183 KNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTL 359
++VI K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+NAESNAD K L
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 360 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 539
DVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV + T AP
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
Query: 540 AKK 548
++
Sbjct: 181 RRQ 183
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 219 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 392
R +G V RC R K EF Q+ + +E S + + L + + I H+
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068
Query: 393 VNRAPCLR 416
+ APCLR
Sbjct: 1069 GSSAPCLR 1076
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 180 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 347
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 348 -NKTLDVDRLVIDHIQ 392
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>04_01_0568 -
7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 587 SSPFDAQAFSWKAFLRW--GIISRGYPSDSIFA 495
S+P+DA ++ +A W ++S+GY SDS+ A
Sbjct: 229 STPYDAASWLSRATFSWINPLVSKGYASDSLAA 261
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +3
Query: 36 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIP 215
++ + + + K C RGS +R+H KN + P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 216 FRRFN 230
F+
Sbjct: 590 VLHFS 594
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 489 SEREDAVARVAPTDDAPAKK 548
+E E+A A+ AP +APAKK
Sbjct: 20 AEEEEAAAKTAPAAEAPAKK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,066
Number of Sequences: 37544
Number of extensions: 347350
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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