Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n08r
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    40   1e-05
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   3.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 39.9 bits (89), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 39/72 (54%)
 Frame = -3

Query: 390 LMDHQLCAGKLTGGVDSCQGDSGGPLQVKINLKVDSAYNIYHIIGVTSFGIGCAQANTPG 211
           +M + +CA     G D+CQ DSGGP+  + N +     N    IG+ S+G  C +   P 
Sbjct: 330 IMVNAMCA--YAKGKDACQMDSGGPVLWQ-NPRTKRLVN----IGIISWGAECGK--YPN 380

Query: 210 IYTRVSSFIDWI 175
             T+V S+IDWI
Sbjct: 381 GNTKVGSYIDWI 392


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 9   VNFMRISLIFYTQTPFICIN 68
           V  M ISL F   TP++ IN
Sbjct: 279 VALMTISLWFMAWTPYLVIN 298


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 289 RLRLQHLPYYRSDVIRHRMCSSEHTRD 209
           RL++        DV+ H   SS HT D
Sbjct: 439 RLQVGQYVTVNGDVVSHLNISSTHTND 465


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 9  VNFMRISLIFYTQTPFICIN 68
          V  M ISL F   TP++ IN
Sbjct: 29 VALMTISLWFMAWTPYLVIN 48


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 348 VDSCQGDSGGPLQVKINLKVDSAYNIYHIIGVTSFGIGC 232
           + + Q D GGPL +K   KV++ ++   +  + + GI C
Sbjct: 437 MSNMQSDDGGPLSLK--NKVETTHSGTSLFRI-NLGIEC 472


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -1

Query: 140 RWKTIDTGQMYFLTSEEFLTIS*MIYTNKWCLGIKY*RNSHKI 12
           +W T  T +     +     IS  IY N+ CL     R   KI
Sbjct: 615 QWHTRSTEKRVSAGTPAAFNISTTIYENQNCLDASSSRRGSKI 657


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 215 PGFILGYPVSLTG*KISYGPENAVQRWKTIDTGQMYFLTSEEFL 84
           P  +LG    LT   ++   EN++ +   I   +++FL    FL
Sbjct: 262 PRIVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFLGCTIFL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,953
Number of Sequences: 438
Number of extensions: 2273
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)