Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n08f
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   2.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   2.3  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   4.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   5.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 229  KISYGPENAVQRWKTIDTGQ 288
            KI Y     V +W+ IDTGQ
Sbjct: 1138 KIDYSTNTVVLKWECIDTGQ 1157


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 311 SSEVRKYICPVSIVFHLCTAFSGP 240
           SSE  KY  P    FH C+ F+ P
Sbjct: 213 SSETNKYEYPQQSKFHECSQFASP 236


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 278 SIVFHLCTAFSGPY--DIFYPVNETGYPSINPGCVRLSTS 165
           SI+++  T  SG    D F P+N T +PS+     ++ ++
Sbjct: 379 SIIYNFSTPISGSSFPDGFKPINPTSFPSLTSSTKKIPST 418


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 75  SGGPLQVKINLKVDSAYNIYHIIGVTSFGIGCAQANTP 188
           S  P    +N ++   Y + ++IG  ++G+ CA  + P
Sbjct: 23  SRSPHTHDLNFELPEEYEMINLIGQGAYGVVCAALHKP 60


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  CQGDSGGPLQVKINLKVDSAYNI 131
           C G S   +Q KI L + SA+NI
Sbjct: 163 CTGPSDSRIQEKIRLFIQSAHNI 185


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 203 PSINPGCVRLSTSDAE*RHSDNMVDVVSGVYL 108
           P +NP  +     D   RH D+  D V  VYL
Sbjct: 608 PELNPNILVEQFIDLVRRHEDSFYDFVHRVYL 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,267
Number of Sequences: 5004
Number of extensions: 39522
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)