Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n08f
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0151 - 26299042-26299207,26301678-26301851,26301926-263019...    30   0.99 
05_07_0253 + 28692309-28692643,28693530-28693569,28693709-286937...    27   5.3  
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118...    27   7.0  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    27   7.0  

>02_05_0151 -
           26299042-26299207,26301678-26301851,26301926-26301987,
           26302082-26302329,26303341-26303416,26303796-26303987,
           26304109-26304225
          Length = 344

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 39  KLTG--GVDSCQGDSGGPLQVKINLKVDSAYNIYHI-IGVTS-FGIGC 170
           ++TG  GVDSC G+ GG L  ++ +  +     + I  GV+S FG  C
Sbjct: 69  EITGIAGVDSCYGEPGGVLSGRLGVNGEKGSTQFQISYGVSSAFGFRC 116


>05_07_0253 +
           28692309-28692643,28693530-28693569,28693709-28693777,
           28694219-28694273,28694796-28694871,28695565-28695702,
           28697361-28697388,28698177-28698413,28698516-28698665,
           28698726-28698734
          Length = 378

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 438 MY*TNKTLYVNYNINVNFMRISLIFYTQTPFIC 340
           MY   +TL++N N+NV   R++ I   +  ++C
Sbjct: 185 MYMKTRTLFMNINMNVGNARMTYIVKRRKYYVC 217


>05_07_0364 - 29611149-29611211,29611441-29611623,29611796-29611853,
            29612150-29612207,29612504-29612561,29612859-29612916,
            29613214-29613271,29613568-29613625,29613923-29613980,
            29614277-29614334,29614631-29614688,29614983-29615040,
            29615337-29615394,29615691-29615748,29616045-29616102,
            29616400-29616457,29616755-29616812,29617109-29617166,
            29617463-29617520,29617817-29617874,29618171-29618228,
            29618525-29618582,29618878-29618935,29619233-29619290,
            29619942-29619999,29620297-29620376,29620649-29620706,
            29621001-29621058,29621353-29621410,29621707-29621764,
            29622415-29622472,29622767-29622824,29623121-29623164,
            29623475-29623532,29623829-29623886,29624537-29624594,
            29624889-29624946,29625243-29625300,29625597-29625654,
            29626305-29626400,29626697-29626792,29627797-29627892,
            29628188-29628283,29629996-29630053,29630350-29630407,
            29630704-29630799,29631096-29631191,29632196-29632253,
            29632549-29632644,29633648-29633743,29634040-29634042
          Length = 1114

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 163  SDVLKRTHPGFILGYPVSLTG*KISYGPEN 252
            +D++K  HP  +   P+  T  KIS GP +
Sbjct: 1051 TDIVKAIHPIVLCAIPILTTSMKISCGPSD 1080


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 244 GHTIFSIQSMKLDTRV*IPGVFA*AHPMPNDVTPIIW 134
           G  I  ++S++LD +V  P +    H + ND T  IW
Sbjct: 399 GVHISKVRSLRLDVKVWEPVIMDLFHELGNDYTNSIW 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,693,874
Number of Sequences: 37544
Number of extensions: 233114
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)