Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n08f
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    73   1e-13
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    61   4e-10
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    48   3e-06
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    36   0.018
U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin conju...    29   1.6  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical p...    27   6.3  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 45/70 (64%)
 Frame = +3

Query: 30  CAGKLTGGVDSCQGDSGGPLQVKINLKVDSAYNIYHIIGVTSFGIGCAQANTPGIYTRVS 209
           CAG L GG+DSCQGDSGGP   +   + D A+ +    GV S+G GCAQ   PGIYT V+
Sbjct: 197 CAGYLEGGIDSCQGDSGGPFACR---REDGAFVL---AGVISWGDGCAQKKQPGIYTMVA 250

Query: 210 SFIDWIENIV 239
            ++ WI  I+
Sbjct: 251 PYLSWISAII 260


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 31/67 (46%), Positives = 38/67 (56%)
 Frame = +3

Query: 27  LCAGKLTGGVDSCQGDSGGPLQVKINLKVDSAYNIYHIIGVTSFGIGCAQANTPGIYTRV 206
           LCAG   G +DSCQGDSGGPL         +    + + GV S+GIGCA+   PG+Y  V
Sbjct: 225 LCAGYSYGKIDSCQGDSGGPLMC-------ARDGHWELTGVVSWGIGCARPGMPGVYGNV 277

Query: 207 SSFIDWI 227
            S   WI
Sbjct: 278 HSASTWI 284


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = +3

Query: 21  HQLCAGKLTGGVDSCQGDSGGPLQVKINLKVDSAYNIYHIIGVTSFGIG-----CAQANT 185
           +Q+CAG    G  +  GDSGGPL +        +   Y  IG+TS+G         Q   
Sbjct: 213 YQICAGAYLHG--TAPGDSGGPLLIH------KSNGEYVQIGITSYGADGLDGVIDQGKF 264

Query: 186 PGIYTRVSSFIDWIENIV 239
           PG+YTR+S ++ WI+ ++
Sbjct: 265 PGVYTRISKYVPWIQGVI 282


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 60  SCQGDSGGPLQVKINLKVDSAYNIYHIIGVTSFGIGCAQANTPGIYTRVSSFIDWIEN 233
           +C GDSGG L+ +     D  Y    +I +TSFG     +N    +TRV  +++ I N
Sbjct: 234 TCHGDSGGGLEYR-----DDNYGRAFLIAITSFGTRGCPSNMLARFTRVDMYLNLICN 286


>U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein17 protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 239 YDIFYPVNETGYPSINPGCVRLSTSDAE*RHSDNM 135
           +DIF+P   TGYP   P C  L+T     R + N+
Sbjct: 464 FDIFFP---TGYPFSPPKCAFLTTGSGNVRFNPNL 495


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 27  LCAGKLTGGVDSCQGDSGGPLQVKINLKVDSAYNIYHI 140
           L A  +TG   +C GDSG P+   +N K      + HI
Sbjct: 198 LIAKAVTGSSRACMGDSGSPVYCFVNGKRILVGTVAHI 235


>Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical
           protein F28C6.9 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 324 YS*EFFRS*EIHLSCINCFPSLHRI 250
           +S + F+  ++HL CI CF  LH I
Sbjct: 41  FSSKHFKMYKMHLKCITCFNILHFI 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,800
Number of Sequences: 27780
Number of extensions: 217781
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)