Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n04r
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    24   5.9  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    23   7.9  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    23   7.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   7.9  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 232 ESQESNEDQVFEHFDCLFSSSESD 303
           + +E  EDQ FE    LFS S S+
Sbjct: 98  DGRERGEDQDFERKSALFSISTSE 121


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 232 ESQESNEDQVFEHFD 276
           E+Q+S+ED   +HFD
Sbjct: 97  EAQDSSEDPFHQHFD 111


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 VRCTQQRPEQYMQQLQGTCSSPAEAWLMRKPGE 245
           V C     + ++  +    S+ AE W+  KPGE
Sbjct: 256 VWCILNNKKVFLYDVHPLHSTSAEDWIHMKPGE 288


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 241 ESNEDQVFEHFD 276
           E NED + EHFD
Sbjct: 82  EENEDSISEHFD 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,646
Number of Sequences: 5004
Number of extensions: 7796
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)