Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n04r
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0078 + 12657239-12658324                                         27   4.0  
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292...    26   6.9  
01_06_0672 + 31084791-31084844,31085081-31085194,31086645-310867...    25   9.2  

>10_07_0078 + 12657239-12658324
          Length = 361

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 156 TQQRPEQYMQQLQGTCSSPAEAWLMRKP 239
           ++QR E+Y     G+CS+ +  W ++ P
Sbjct: 90  SEQRRERYASPYPGSCSNSSLLWCLQDP 117


>02_04_0290 -
           21627733-21628353,21628424-21628663,21628874-21629214,
           21630934-21631612,21631893-21631962,21632063-21632190
          Length = 692

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 120 MQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRK 236
           ++S+ S PG       P    Q L GT  S  E W   K
Sbjct: 549 LRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAK 587


>01_06_0672 +
           31084791-31084844,31085081-31085194,31086645-31086775,
           31086911-31086979,31087532-31087603,31087727-31087799,
           31087901-31087947,31088468-31088534
          Length = 208

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 165 RPEQYMQQLQGTCSS 209
           R + YMQQL+G+CSS
Sbjct: 109 RWDTYMQQLKGSCSS 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,682,116
Number of Sequences: 37544
Number of extensions: 51360
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)