Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n04f
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0078 + 12657239-12658324                                         27   5.5  
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292...    26   9.6  

>10_07_0078 + 12657239-12658324
          Length = 361

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 153 TQQRPEQYMQQLQGTCSSPAEAWLMRKP 70
           ++QR E+Y     G+CS+ +  W ++ P
Sbjct: 90  SEQRRERYASPYPGSCSNSSLLWCLQDP 117


>02_04_0290 -
           21627733-21628353,21628424-21628663,21628874-21629214,
           21630934-21631612,21631893-21631962,21632063-21632190
          Length = 692

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 189 MQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRK 73
           ++S+ S PG       P    Q L GT  S  E W   K
Sbjct: 549 LRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAK 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,695,584
Number of Sequences: 37544
Number of extensions: 66059
Number of successful extensions: 175
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)