Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n04f
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of fu...    29   0.71 
U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of fu...    29   0.71 
AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger p...    29   0.71 
Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    26   8.7  

>U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform a protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 198 PENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKP 70
           PEN++  Q    +     RP  +MQ  Q   S+P     M KP
Sbjct: 257 PENIKRDQHLHTMHTFMDRPNPFMQMYQNQFSNPTYHMFMAKP 299


>U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform b protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 198 PENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKP 70
           PEN++  Q    +     RP  +MQ  Q   S+P     M KP
Sbjct: 270 PENIKRDQHLHTMHTFMDRPNPFMQMYQNQFSNPTYHMFMAKP 312


>AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger
           protein REF-2 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 198 PENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKP 70
           PEN++  Q    +     RP  +MQ  Q   S+P     M KP
Sbjct: 258 PENIKRDQHLHTMHTFMDRPNPFMQMYQNQFSNPTYHMFMAKP 300


>Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical
          protein Y57G11B.5 protein.
          Length = 225

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 39 MFKYLIFVALLAFASAKPL 95
          MFK L+F ALLA+A A P+
Sbjct: 1  MFKSLVFSALLAYAVAAPM 19


>Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical
           protein T23D8.9b protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 201 QPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKPGEQRR 55
           QP   Q  Q TP    TQQ+ +   QQ +   SSP+ +     P + ++
Sbjct: 59  QPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAPAQNQK 107


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 201 QPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKPGEQRR 55
           QP   Q  Q TP    TQQ+ +   QQ +   SSP+ +     P + ++
Sbjct: 59  QPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAPAQNQK 107


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 168 PGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKPGE 64
           PG+ CT +R  Q  Q+++    S  E +L+ KP +
Sbjct: 183 PGLECTNRRSRQAEQEIEQELRSD-EKYLLLKPSK 216


>U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical
           protein W03A5.2 protein.
          Length = 241

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 338 NYTFLYWNQINKILSHQHIWFHEF 267
           N+  L  N++  +L++ +IWFH F
Sbjct: 101 NHVALIGNKLALLLANLYIWFHAF 124


>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 350 FFFSNYTFLYWNQINKILSHQHIWFHEFR 264
           F  S +    WN+IN I    H   +EFR
Sbjct: 19  FLVSTFVPALWNKINDITGELHYDMNEFR 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,439,312
Number of Sequences: 27780
Number of extensions: 68767
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)