Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n04f
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 320 WNQINKILSHQHIWFHEF 267
           W + N +L+ QH+ FH++
Sbjct: 183 WMRRN-VLNKQHVHFHDY 199


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -3

Query: 162 VRCTQQRPEQYMQQLQGTCSSPAEAW 85
           VR ++   E+Y ++       P E W
Sbjct: 605 VRESEAFAEEYTEEAYSVAQEPEEEW 630


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 344 FSNYTFLYWNQIN 306
           ++NY  LY+N IN
Sbjct: 346 YNNYKKLYYNIIN 358


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -3

Query: 201  QPENMQSTQSTPGVRCTQQRPEQYMQQLQ 115
            QP+  Q  Q     +   Q+P+Q   Q Q
Sbjct: 1504 QPQQQQQQQQQQQPQQQSQQPQQQQPQPQ 1532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,393
Number of Sequences: 438
Number of extensions: 893
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)