Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n03r
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 188 3e-48
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 126 2e-29
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 113 2e-25
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 110 1e-24
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 106 2e-23
04_04_0920 + 29429114-29430934 29 4.1
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 29 4.1
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 5.4
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 7.2
07_03_0948 - 22821069-22822067 28 9.5
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 188 bits (459), Expect = 3e-48
Identities = 94/214 (43%), Positives = 136/214 (63%)
Frame = -3
Query: 763 SLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINE 584
S+ +I + E + ADLV+EAIVE+ ++K KLF +LD + I ASNTSS+SI
Sbjct: 74 SIEQIKCVSSVQEL-RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSISITR 132
Query: 583 IASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTP 404
+AS R + G+HFFNP P+M+L+E+++G++TSE + + + + +GKT I +D P
Sbjct: 133 LASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLGKTVICSQDYP 192
Query: 403 GFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILD 224
GF+VNR+L+P I EA G A+ DID MKLG +PMGPL+LAD++GLD +L
Sbjct: 193 GFIVNRILMPMINEAFWALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCLSVLR 252
Query: 223 GWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEG 122
H D + + P PLL + V G+LG K G+G
Sbjct: 253 VLHNGLGDSK-YSPCPLLVQYVDAGRLGKKRGQG 285
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 126 bits (304), Expect = 2e-29
Identities = 70/203 (34%), Positives = 111/203 (54%)
Frame = -3
Query: 727 EASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFG 548
E K DLV+EA++EN+++K ++F L+ PSH + A+NTS++ +N I + KD+
Sbjct: 389 ERFKDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIV 448
Query: 547 GLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYI 368
G HFF+P VM LLE+V+ TS +++ GK + KT I + GF VNR+ PY
Sbjct: 449 GAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPIVVGNCTGFAVNRMFFPYT 508
Query: 367 CEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLF 188
A+ + G ID A G PMGP LAD VG + + FP ++++
Sbjct: 509 QSALLFVDLG-MDVYKIDRAC-TKFGMPMGPFRLADLVGFGVAAATGMQYLENFP-ERVY 565
Query: 187 KPIPLLEKLVAEGKLGVKTGEGF 119
K + L+ ++ + + G + +GF
Sbjct: 566 KSM-LIPLMMEDKRTGEASRKGF 587
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = -3
Query: 397 VVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 230
+V + P I EA R+ + G A A D+DIA G G+P G + AD +G
Sbjct: 629 IVEMVFFPVINEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGIMFWADSIGAKYIHDK 688
Query: 229 LDGWHKKFPDQQLFKPIPLLEKLVAEG 149
L+ W K++ D +FKP L + A G
Sbjct: 689 LEVWAKRYSD--IFKPCSYLAERAANG 713
>02_02_0418 + 10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 113 bits (271), Expect = 2e-25
Identities = 67/217 (30%), Positives = 108/217 (49%)
Frame = -3
Query: 769 NDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSI 590
N ++ + A D ++ K D+V+EA++E I +K +F L+ V P H I A+NTS++ +
Sbjct: 371 NKAMSLLKGALDYSDF-KDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDL 429
Query: 589 NEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKD 410
N + +D+ G HFF+P +M LLE+V+ +TS ++ GK + K + +
Sbjct: 430 NVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPVVVGN 489
Query: 409 TPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFI 230
GF VNR PY + L G R ID + G PMGP +L D G +
Sbjct: 490 CTGFAVNRTFFPYTQGSHLLVSIGIDVFR-IDRVIS-SFGMPMGPFQLQDLAGYGVALAV 547
Query: 229 LDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 119
D + F + L L++ +V G+ G G+G+
Sbjct: 548 KDIYAAAFGTRNL--DSNLVDLMVQNGRQGKSNGKGY 582
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 110 bits (265), Expect = 1e-24
Identities = 54/148 (36%), Positives = 84/148 (56%)
Frame = -3
Query: 694 AIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVM 515
A+VEN++VK ++F L+ PSH + A+NTS++ ++ I +D+ G HFF+P VM
Sbjct: 415 AVVENVKVKQQVFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVM 474
Query: 514 RLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGD 335
LLE+V+ + TS +++ GK + KT + + GF VNR+ PY A+ L +RG
Sbjct: 475 PLLEIVRSNHTSPQVVVDLLDVGKKIKKTPVVVGNCTGFAVNRMFSPYTSIALLLVDRGM 534
Query: 334 ASARDIDIAMKLGAGYPMGPLELADYVG 251
+ + + G PMGP L D VG
Sbjct: 535 DVYKIDQVCTEF--GMPMGPFRLLDLVG 560
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = -3
Query: 397 VVNRLLVPYICEAIRLYERGDAS-ARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 230
+V + P I EA ++ G A+ A D+DIA G G+P G + AD +G
Sbjct: 644 IVEMVFFPVINEACQVLSEGIANKASDLDIASIFGMGFPPYRGGIVYWADSIGAKRIHAR 703
Query: 229 LDGWHKKFPDQQLFKPIPLLEKLVAEG 149
L W K QLF+P L + AEG
Sbjct: 704 LSEWEMK--HGQLFRPCSYLSERAAEG 728
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 106 bits (255), Expect = 2e-23
Identities = 62/203 (30%), Positives = 106/203 (52%)
Frame = -3
Query: 727 EASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFG 548
E + AD+V+EA++E++ +K K+F L+ S+ I A+NTS++ ++ I +D+
Sbjct: 386 EQFREADVVIEAVIEDLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIA 445
Query: 547 GLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYI 368
G HFF+P M LLE+++ TS ++ K + KT I + GF VNR+ P+
Sbjct: 446 GAHFFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAKQIRKTPIVVGNCTGFAVNRMFFPFT 505
Query: 367 CEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLF 188
A L + G ID + G PMGP LAD VG + + +P ++ +
Sbjct: 506 QVAYFLVDYG-LDVYHIDHVI-TKFGMPMGPFRLADLVGFGVAIASRKQYLQSYP-ERCY 562
Query: 187 KPIPLLEKLVAEGKLGVKTGEGF 119
K + L++ ++ E + G + +GF
Sbjct: 563 KSM-LIQIMLEENRTGESSRKGF 584
Score = 35.1 bits (77), Expect = 0.063
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = -3
Query: 415 KDTPGFVVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGL 248
K T +V +L P + EA RL + G A A D+D+A +G G+P G + AD G
Sbjct: 620 KLTDDEIVEMMLFPVVNEACRLLDEGVAMKASDLDVASIMGRGFPSYRGGVMFWADSFGA 679
Query: 247 DTNKFILDGWHKKFPDQQLFKPIPLLEKLVAEG 149
L W K +F+P L +G
Sbjct: 680 KYIYDRLKDWSKYHGG--IFEPYEYLSTRARQG 710
>04_04_0920 + 29429114-29430934
Length = 606
Score = 29.1 bits (62), Expect = 4.1
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = -3
Query: 652 QLDGVAPSHTIFASNTSSLSINEIASVVK-------RKDKFGGLHFFNPVPVMRLLEVVK 494
+ DG+AP+ TI++S SL+ +S + +K + G F V VM +E +
Sbjct: 287 EADGIAPNATIYSSIIRSLADAHESSAAEDLYNEAWKKGRLGDPDMFLKVIVMH-VEAGR 345
Query: 493 GSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYER 341
E K M E G V CI GFV R L P AIR Y++
Sbjct: 346 -VEKIMGVAKDMRETGLRV-TDCILSTIVNGFVKRRGLKP----AIRAYDK 390
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 451 WGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYER 341
W K + +T + TP V+ L + +C+A RLY R
Sbjct: 107 WLKRAAEASVTARLTPEHAVDMLKLARLCDAPRLYLR 143
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 292 GYPMGPLELADYVGLDTNKFILDGWHKKFPDQ 197
GY + PL A + TN+F+ W+K FP Q
Sbjct: 744 GYWISPLSYAQNA-ISTNEFLGRSWNKSFPGQ 774
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 527 RIEEMKTTKFVFPFYDGCNFIYR 595
R+EE+ TTK +F +D C YR
Sbjct: 310 RLEELPTTKHLFTLFDSCFPYYR 332
>07_03_0948 - 22821069-22822067
Length = 332
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 215 QEVSGSATLQTYTLARKACC-*RKIRCEDWGR 123
Q + ATL T++LA CC +RC++ GR
Sbjct: 40 QSLGNPATLSTWSLASADCCEWDHVRCDEAGR 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,959
Number of Sequences: 37544
Number of extensions: 404326
Number of successful extensions: 961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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