Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n03r
         (771 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF181648-1|AAD55434.1|  783|Drosophila melanogaster BcDNA.GH1255...   142   6e-34
AE014134-1659|AAN10698.1|  744|Drosophila melanogaster CG4389-PC...   142   6e-34
AE014134-1658|AAN10697.1|  744|Drosophila melanogaster CG4389-PB...   142   6e-34
AE014134-1657|AAF52789.1|  783|Drosophila melanogaster CG4389-PA...   142   6e-34
BT009948-1|AAQ22417.1|  315|Drosophila melanogaster RH68464p pro...    76   5e-14
AE014298-2360|AAF48586.2|  315|Drosophila melanogaster CG9914-PA...    76   5e-14
BT015982-1|AAV36867.1|  315|Drosophila melanogaster RE67096p pro...    64   2e-10
AY069189-1|AAL39334.1|  296|Drosophila melanogaster GH23990p pro...    64   2e-10
AE013599-1926|AAF58227.1|  315|Drosophila melanogaster CG10131-P...    64   2e-10
AY113421-1|AAM29426.1|  511|Drosophila melanogaster RE18828p pro...    29   9.3  
AE014296-2738|AAF49463.1|  511|Drosophila melanogaster CG4573-PA...    29   9.3  

>AF181648-1|AAD55434.1|  783|Drosophila melanogaster BcDNA.GH12558
            protein.
          Length = 783

 Score =  142 bits (343), Expect = 6e-34
 Identities = 76/199 (38%), Positives = 117/199 (58%)
 Frame = -3

Query: 718  KSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLH 539
            K+AD+++EA+ E+I+VKH++ K+L+ V P H + A+NTS++ I +IA+   R +K  G+H
Sbjct: 451  KNADIIIEAVFEDIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGSSRPEKVVGMH 510

Query: 538  FFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEA 359
            +F+PV  M+LLE++    TS+ T    +  G   GK  IT  D PGF   R+L   + EA
Sbjct: 511  YFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRILSTMLSEA 570

Query: 358  IRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPI 179
            IRL + G    +D+D   K   G+P+G   LAD VG+D    I     K F ++     +
Sbjct: 571  IRLLQEG-VDPKDLDQYTK-KFGFPVGAATLADEVGIDVGSHIAVDLAKAFGERFSGGNL 628

Query: 178  PLLEKLVAEGKLGVKTGEG 122
             ++  LV  G LG K+G+G
Sbjct: 629  EVMNDLVLAGFLGRKSGKG 647


>AE014134-1659|AAN10698.1|  744|Drosophila melanogaster CG4389-PC,
            isoform C protein.
          Length = 744

 Score =  142 bits (343), Expect = 6e-34
 Identities = 76/199 (38%), Positives = 117/199 (58%)
 Frame = -3

Query: 718  KSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLH 539
            K+AD+++EA+ E+I+VKH++ K+L+ V P H + A+NTS++ I +IA+   R +K  G+H
Sbjct: 412  KNADIIIEAVFEDIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGSSRPEKVVGMH 471

Query: 538  FFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEA 359
            +F+PV  M+LLE++    TS+ T    +  G   GK  IT  D PGF   R+L   + EA
Sbjct: 472  YFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRILSTMLSEA 531

Query: 358  IRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPI 179
            IRL + G    +D+D   K   G+P+G   LAD VG+D    I     K F ++     +
Sbjct: 532  IRLLQEG-VDPKDLDQYTK-KFGFPVGAATLADEVGIDVGSHIAVDLAKAFGERFSGGNL 589

Query: 178  PLLEKLVAEGKLGVKTGEG 122
             ++  LV  G LG K+G+G
Sbjct: 590  EVMNDLVLAGFLGRKSGKG 608


>AE014134-1658|AAN10697.1|  744|Drosophila melanogaster CG4389-PB,
            isoform B protein.
          Length = 744

 Score =  142 bits (343), Expect = 6e-34
 Identities = 76/199 (38%), Positives = 117/199 (58%)
 Frame = -3

Query: 718  KSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLH 539
            K+AD+++EA+ E+I+VKH++ K+L+ V P H + A+NTS++ I +IA+   R +K  G+H
Sbjct: 412  KNADIIIEAVFEDIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGSSRPEKVVGMH 471

Query: 538  FFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEA 359
            +F+PV  M+LLE++    TS+ T    +  G   GK  IT  D PGF   R+L   + EA
Sbjct: 472  YFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRILSTMLSEA 531

Query: 358  IRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPI 179
            IRL + G    +D+D   K   G+P+G   LAD VG+D    I     K F ++     +
Sbjct: 532  IRLLQEG-VDPKDLDQYTK-KFGFPVGAATLADEVGIDVGSHIAVDLAKAFGERFSGGNL 589

Query: 178  PLLEKLVAEGKLGVKTGEG 122
             ++  LV  G LG K+G+G
Sbjct: 590  EVMNDLVLAGFLGRKSGKG 608


>AE014134-1657|AAF52789.1|  783|Drosophila melanogaster CG4389-PA,
            isoform A protein.
          Length = 783

 Score =  142 bits (343), Expect = 6e-34
 Identities = 76/199 (38%), Positives = 117/199 (58%)
 Frame = -3

Query: 718  KSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLH 539
            K+AD+++EA+ E+I+VKH++ K+L+ V P H + A+NTS++ I +IA+   R +K  G+H
Sbjct: 451  KNADIIIEAVFEDIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGSSRPEKVVGMH 510

Query: 538  FFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEA 359
            +F+PV  M+LLE++    TS+ T    +  G   GK  IT  D PGF   R+L   + EA
Sbjct: 511  YFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRILSTMLSEA 570

Query: 358  IRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPI 179
            IRL + G    +D+D   K   G+P+G   LAD VG+D    I     K F ++     +
Sbjct: 571  IRLLQEG-VDPKDLDQYTK-KFGFPVGAATLADEVGIDVGSHIAVDLAKAFGERFSGGNL 628

Query: 178  PLLEKLVAEGKLGVKTGEG 122
             ++  LV  G LG K+G+G
Sbjct: 629  EVMNDLVLAGFLGRKSGKG 647


>BT009948-1|AAQ22417.1|  315|Drosophila melanogaster RH68464p
           protein.
          Length = 315

 Score = 76.2 bits (179), Expect = 5e-14
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
 Frame = -3

Query: 751 INTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASV 572
           I+   D  E  K A  V E I E +++K  L+KQLD V   +TI +S+TS+   +  ++ 
Sbjct: 74  ISGTNDLKELVKGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSAD 133

Query: 571 VKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT-CKDTPGFV 395
           +K K      H  NP   + L+E+V    T     K      + +G+  +T  ++  GF 
Sbjct: 134 LKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFA 193

Query: 394 VNRLLVPYICEAIRLYERGDASARDIDIAMKLGAG--YP-MGPLELA 263
           +NR+    + E  RL E G  + +DID  M  G G  Y  +GPLE A
Sbjct: 194 LNRIQYAILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETA 240


>AE014298-2360|AAF48586.2|  315|Drosophila melanogaster CG9914-PA
           protein.
          Length = 315

 Score = 76.2 bits (179), Expect = 5e-14
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
 Frame = -3

Query: 751 INTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASV 572
           I+   D  E  K A  V E I E +++K  L+KQLD V   +TI +S+TS+   +  ++ 
Sbjct: 74  ISGTNDLKELVKGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSAD 133

Query: 571 VKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT-CKDTPGFV 395
           +K K      H  NP   + L+E+V    T     K      + +G+  +T  ++  GF 
Sbjct: 134 LKNKANVLVSHPVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFA 193

Query: 394 VNRLLVPYICEAIRLYERGDASARDIDIAMKLGAG--YP-MGPLELA 263
           +NR+    + E  RL E G  + +DID  M  G G  Y  +GPLE A
Sbjct: 194 LNRIQYAILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETA 240


>BT015982-1|AAV36867.1|  315|Drosophila melanogaster RE67096p
           protein.
          Length = 315

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
 Frame = -3

Query: 769 NDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSI 590
           ++    I   T   E ++ A  + E + E + +K  L+ QLD +    T+ AS+TS+   
Sbjct: 66  SEQFALIGVTTRLEELTREAVHIQECVPEVLHLKKSLYSQLDELLEEQTVVASSTSTFMP 125

Query: 589 NEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCK- 413
           +  +  ++++ +    H  NP   + L+E+V    TS +  +   +   S+G+  +T K 
Sbjct: 126 SLYSEGLQKRQQMLVAHPLNPPYFIPLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKR 185

Query: 412 DTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYP---MGPLELA 263
           +  GF  NR+    + E  RL   G  S  D+D  +  G G     +G LE A
Sbjct: 186 EIQGFATNRIQYAILNEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETA 238


>AY069189-1|AAL39334.1|  296|Drosophila melanogaster GH23990p
           protein.
          Length = 296

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
 Frame = -3

Query: 769 NDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSI 590
           ++    I   T   E ++ A  + E + E + +K  L+ QLD +    T+ AS+TS+   
Sbjct: 47  SEQFALIGVTTRLEELTREAVHIQECVPEVLHLKKSLYSQLDELLEEQTVVASSTSTFMP 106

Query: 589 NEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCK- 413
           +  +  ++++ +    H  NP   + L+E+V    TS +  +   +   S+G+  +T K 
Sbjct: 107 SLYSEGLQKRQQMLVAHPLNPPYFIPLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKR 166

Query: 412 DTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYP---MGPLELA 263
           +  GF  NR+    + E  RL   G  S  D+D  +  G G     +G LE A
Sbjct: 167 EIQGFATNRIQYAILNEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETA 219


>AE013599-1926|AAF58227.1|  315|Drosophila melanogaster CG10131-PA
           protein.
          Length = 315

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
 Frame = -3

Query: 769 NDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSI 590
           ++    I   T   E ++ A  + E + E + +K  L+ QLD +    T+ AS+TS+   
Sbjct: 66  SEQFALIGVTTRLEELTREAVHIQECVPEVLHLKKSLYSQLDELLEEQTVVASSTSTFMP 125

Query: 589 NEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCK- 413
           +  +  ++++ +    H  NP   + L+E+V    TS +  +   +   S+G+  +T K 
Sbjct: 126 SLYSEGLQKRQQMLVAHPLNPPYFIPLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKR 185

Query: 412 DTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYP---MGPLELA 263
           +  GF  NR+    + E  RL   G  S  D+D  +  G G     +G LE A
Sbjct: 186 EIQGFATNRIQYAILNEVWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETA 238


>AY113421-1|AAM29426.1|  511|Drosophila melanogaster RE18828p
           protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -3

Query: 658 FKQLDGVAP-SHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVP--VMRLLEVVKGS 488
           FK  D   P    I+     ++S NE   VV + D+F   HF N V   +M +  V++G 
Sbjct: 173 FKLTDHEEPLDDLIYGKVHHNVSDNEGDPVVMKSDQFPTYHFANVVDDHLMGITHVLRGV 232

Query: 487 ETSEATYKTMM 455
           E   +T K ++
Sbjct: 233 EWQISTTKHLL 243


>AE014296-2738|AAF49463.1|  511|Drosophila melanogaster CG4573-PA
           protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -3

Query: 658 FKQLDGVAP-SHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVP--VMRLLEVVKGS 488
           FK  D   P    I+     ++S NE   VV + D+F   HF N V   +M +  V++G 
Sbjct: 173 FKLTDHEEPLDDLIYGKVHHNVSDNEGDPVVMKSDQFPTYHFANVVDDHLMGITHVLRGV 232

Query: 487 ETSEATYKTMM 455
           E   +T K ++
Sbjct: 233 EWQISTTKHLL 243


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,136,778
Number of Sequences: 53049
Number of extensions: 690250
Number of successful extensions: 1420
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)