Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n03r
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical pr... 291 5e-79
Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical pr... 277 8e-75
AF039046-12|AAB94215.1| 299|Caenorhabditis elegans Hydroxy-acyl... 215 4e-56
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 142 2e-34
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 142 2e-34
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 142 2e-34
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 136 2e-32
Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z81055-3|CAB02892.2| 434|Caenorhabditis elegans Hypothetical pr... 112 2e-25
AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical... 75 4e-14
AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical... 75 4e-14
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 31 1.2
AL110499-2|CAB57913.1| 297|Caenorhabditis elegans Hypothetical ... 29 2.8
AL110499-1|CAB57912.1| 325|Caenorhabditis elegans Hypothetical ... 29 2.8
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 28 6.4
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 28 6.4
>Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical
protein B0272.3 protein.
Length = 309
Score = 291 bits (713), Expect = 5e-79
Identities = 131/214 (61%), Positives = 171/214 (79%)
Frame = -3
Query: 760 LGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEI 581
L RI +T+ +++ K ADLV+EAIVENI++K KLF +++ A T+ +NTSSL + +I
Sbjct: 92 LDRIKMSTNVSDSVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLITTNTSSLRLADI 151
Query: 580 ASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPG 401
+K K +FGGLHFFNPVP+M+LLEVV+ +ETS+AT+ ++++GK+VGKT + CKDTPG
Sbjct: 152 GLNLKDKSRFGGLHFFNPVPMMKLLEVVRHTETSDATFNQLVDYGKTVGKTTVACKDTPG 211
Query: 400 FVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDG 221
F+VNRLLVPY+ EA+RLYERGDAS DID+AMKLGAGYPMGP EL+DYVGLDT KFI+DG
Sbjct: 212 FIVNRLLVPYMFEALRLYERGDASMEDIDVAMKLGAGYPMGPFELSDYVGLDTCKFIMDG 271
Query: 220 WHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 119
WH ++P++ F P PLL LV GK G K+GEGF
Sbjct: 272 WHAQYPEEVAFTPSPLLNSLVDSGKNGRKSGEGF 305
>Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical
protein F54C8.1 protein.
Length = 298
Score = 277 bits (678), Expect = 8e-75
Identities = 121/215 (56%), Positives = 166/215 (77%)
Frame = -3
Query: 763 SLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINE 584
++ RI T + + A ADL++EA +ENI++K +F Q++ +I +NTSS + +
Sbjct: 79 TMSRIKTCNNVSTAVADADLIIEAAIENIDLKRGIFAQIEQSCKKDSILTTNTSSFLLED 138
Query: 583 IASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTP 404
+A ++ K +FGGLHFFNPVPVM+LLEV++ +TS+ TY T++++G +VGKT + CKD+P
Sbjct: 139 VAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSDETYATLIKFGTAVGKTTVACKDSP 198
Query: 403 GFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILD 224
GF+VNRLL+PY EA R+YERGDAS DID AMKLGAG+PMGP ELADY+GLDT KF++D
Sbjct: 199 GFIVNRLLIPYFFEAARMYERGDASMTDIDEAMKLGAGHPMGPFELADYIGLDTVKFVMD 258
Query: 223 GWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 119
GW K+P+ QLF+ PL++KLVAEGKLG KTG+GF
Sbjct: 259 GWAAKYPEVQLFEASPLVDKLVAEGKLGRKTGDGF 293
>AF039046-12|AAB94215.1| 299|Caenorhabditis elegans
Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
Length = 299
Score = 215 bits (524), Expect = 4e-56
Identities = 98/207 (47%), Positives = 139/207 (67%)
Frame = -3
Query: 739 TDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRK 560
TD A++ A + +EA+ EN+++K +F+ + P + + +NTSSL ++++ V++
Sbjct: 90 TDIPSAAEDAAMAIEAVAENLDLKLDIFQTIQKTCPQNCMLITNTSSLKLSQMLPVIQNP 149
Query: 559 DKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLL 380
F GLHFFNPVPVM+L+EVV ETS T + + K + K + KDTPGF+VNRLL
Sbjct: 150 ALFAGLHFFNPVPVMKLVEVVSTDETSPETTNFLFNFCKEIKKLPVAAKDTPGFIVNRLL 209
Query: 379 VPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPD 200
+PY+ ++IR+ ERGDA+ DID AM+ G YPMGP+EL DYVGLD + L + + P
Sbjct: 210 IPYLMDSIRMLERGDATKEDIDTAMRFGTSYPMGPIELCDYVGLDVLQSTLKIFRETIPG 269
Query: 199 QQLFKPIPLLEKLVAEGKLGVKTGEGF 119
F PIPL++KLVAEGKLG KT +GF
Sbjct: 270 DARFAPIPLMDKLVAEGKLGRKTKQGF 296
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 142 bits (345), Expect = 2e-34
Identities = 80/201 (39%), Positives = 114/201 (56%)
Frame = -3
Query: 724 ASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGG 545
A K+AD+V+EA+ E++++KHK+ KQ++ V +TI ASNTS+L I +IA+ R DK G
Sbjct: 454 AMKNADVVIEAVFEDLQLKHKVIKQIESVVGPNTIIASNTSALPIKDIAAASSRPDKVIG 513
Query: 544 LHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYIC 365
+H+F+PV M+LLE++ TS+ T T + G GK + KD PGF V R L P
Sbjct: 514 MHYFSPVEKMQLLEIITHDGTSKETLATAAQLGLKQGKLVVVVKDCPGFFVVRCLGPMTA 573
Query: 364 EAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFK 185
E +RL + G A + K G+P+G LAD VGLD + + K +
Sbjct: 574 EIMRLLQEGVDPAELDKLTTKF--GFPVGAATLADEVGLDVAEHVAQFLGKALGPRLGGG 631
Query: 184 PIPLLEKLVAEGKLGVKTGEG 122
LL +LV G G KTG+G
Sbjct: 632 SADLLSELVKAGHKGRKTGKG 652
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 142 bits (345), Expect = 2e-34
Identities = 80/201 (39%), Positives = 114/201 (56%)
Frame = -3
Query: 724 ASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGG 545
A K+AD+V+EA+ E++++KHK+ KQ++ V +TI ASNTS+L I +IA+ R DK G
Sbjct: 428 AMKNADVVIEAVFEDLQLKHKVIKQIESVVGPNTIIASNTSALPIKDIAAASSRPDKVIG 487
Query: 544 LHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYIC 365
+H+F+PV M+LLE++ TS+ T T + G GK + KD PGF V R L P
Sbjct: 488 MHYFSPVEKMQLLEIITHDGTSKETLATAAQLGLKQGKLVVVVKDCPGFFVVRCLGPMTA 547
Query: 364 EAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFK 185
E +RL + G A + K G+P+G LAD VGLD + + K +
Sbjct: 548 EIMRLLQEGVDPAELDKLTTKF--GFPVGAATLADEVGLDVAEHVAQFLGKALGPRLGGG 605
Query: 184 PIPLLEKLVAEGKLGVKTGEG 122
LL +LV G G KTG+G
Sbjct: 606 SADLLSELVKAGHKGRKTGKG 626
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -3
Query: 388 RLLVPYICEAIRLYERGD-ASARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFILDG 221
RL+ ++ EA+ E G AS D DIA G G+P GP D G D ++
Sbjct: 668 RLVSRFVNEALLCLEEGVLASPSDGDIASVFGVGFPPFWGGPFRFVDLYGADKLVKSMEK 727
Query: 220 WHKKFPDQQLFKPIPLLEKLVAEGK 146
+ + Q F+P LL+ GK
Sbjct: 728 FAGAYEAVQ-FEPCQLLKDHAKSGK 751
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 142 bits (345), Expect = 2e-34
Identities = 80/201 (39%), Positives = 114/201 (56%)
Frame = -3
Query: 724 ASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGG 545
A K+AD+V+EA+ E++++KHK+ KQ++ V +TI ASNTS+L I +IA+ R DK G
Sbjct: 454 AMKNADVVIEAVFEDLQLKHKVIKQIESVVGPNTIIASNTSALPIKDIAAASSRPDKVIG 513
Query: 544 LHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYIC 365
+H+F+PV M+LLE++ TS+ T T + G GK + KD PGF V R L P
Sbjct: 514 MHYFSPVEKMQLLEIITHDGTSKETLATAAQLGLKQGKLVVVVKDCPGFFVVRCLGPMTA 573
Query: 364 EAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFK 185
E +RL + G A + K G+P+G LAD VGLD + + K +
Sbjct: 574 EIMRLLQEGVDPAELDKLTTKF--GFPVGAATLADEVGLDVAEHVAQFLGKALGPRLGGG 631
Query: 184 PIPLLEKLVAEGKLGVKTGEG 122
LL +LV G G KTG+G
Sbjct: 632 SADLLSELVKAGHKGRKTGKG 652
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -3
Query: 388 RLLVPYICEAIRLYERGD-ASARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFILDG 221
RL+ ++ EA+ E G AS D DIA G G+P GP D G D ++
Sbjct: 694 RLVSRFVNEALLCLEEGVLASPSDGDIASVFGVGFPPFWGGPFRFVDLYGADKLVKSMEK 753
Query: 220 WHKKFPDQQLFKPIPLLEKLVAEGK 146
+ + Q F+P LL+ GK
Sbjct: 754 FAGAYEAVQ-FEPCQLLKDHAKSGK 777
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical protein
C29F3.1 protein.
Length = 755
Score = 136 bits (329), Expect = 2e-32
Identities = 75/201 (37%), Positives = 113/201 (56%)
Frame = -3
Query: 724 ASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGG 545
A K+AD+V+EA+ E++ +KHK+ +Q++ V +TI ASNTS+L I +IA+ R DK G
Sbjct: 428 AMKNADVVIEAVFEDLPLKHKVIRQIENVVGPNTIIASNTSALPIKDIAAASSRSDKVIG 487
Query: 544 LHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYIC 365
+H+F+PV M+LLE++ TS+ T T + G GK + KD PGF V R L P +
Sbjct: 488 MHYFSPVEKMQLLEIITHDGTSKETLATAAQLGLKQGKLVVVVKDCPGFFVVRCLSPMMS 547
Query: 364 EAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFK 185
E +RL + G ++D + G+P+G LAD GLD + + +
Sbjct: 548 EIVRLLQEG-VEPSELD-KLTTKFGFPVGAATLADEAGLDVAEHVARYLGTALGPRVHGG 605
Query: 184 PIPLLEKLVAEGKLGVKTGEG 122
+ LL +LV G G KT +G
Sbjct: 606 SVDLLSELVRAGHKGRKTSKG 626
>Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical
protein F01G10.2 protein.
Length = 437
Score = 116 bits (278), Expect = 2e-26
Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
Frame = -3
Query: 715 SADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHF 536
+ DL+VEA+ E++++K +LF +LD + IF +NTSSL +NE++SV++ K G+HF
Sbjct: 118 NCDLIVEAVFEDMKLKKELFTKLDKICKPSCIFGTNTSSLDLNEMSSVLRDPTKVVGIHF 177
Query: 535 FNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAI 356
FNP ++R++EV+ GS+TS T E +S+ K + + P FV NRLL Y+ ++
Sbjct: 178 FNPANLIRMVEVIYGSKTSSKAVATAFEACRSIKKLPVLVGNCPAFVFNRLLGVYLNQSQ 237
Query: 355 RL-YERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFIL--DGW 218
+L YE G ID + G+ MGPL +AD GLD + + +GW
Sbjct: 238 KLMYEYG-YLPHQID-KIITNFGFLMGPLTVADMNGLDVMEKLKKENGW 284
>Z81055-3|CAB02892.2| 434|Caenorhabditis elegans Hypothetical
protein F01G10.3 protein.
Length = 434
Score = 112 bits (270), Expect = 2e-25
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 1/200 (0%)
Frame = -3
Query: 715 SADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHF 536
+ DL+VE+++E++++K +LF L+ + S IF +NTSSL +NEI+SV++ G+HF
Sbjct: 115 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHF 174
Query: 535 FNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAI 356
FNP V+RL+E++ GS TS T + +S+ K + + FV NRLL Y ++
Sbjct: 175 FNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQ 234
Query: 355 RL-YERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPI 179
+L YE G ID + G+ MGP+ +AD G D +K + +P
Sbjct: 235 KLMYEYG-YLPHQID-KIITNFGFLMGPMTVADMNGFDV--------MEKLKKENGLEPN 284
Query: 178 PLLEKLVAEGKLGVKTGEGF 119
P+ +++ + G KT +GF
Sbjct: 285 PIEKEMWRLKRYGRKTNKGF 304
>AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical
protein Y71F9B.9a protein.
Length = 284
Score = 75.4 bits (177), Expect = 4e-14
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = -3
Query: 769 NDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSI 590
+++L R++T T E K+A + E+ +E++ + + +K +D +A TI AS+TS++
Sbjct: 36 DEALLRVSTTTSLNEVMKNAIYMQESALEDLNFRIQFYKVIDEIADPTTILASSTSTIPA 95
Query: 589 NEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCK- 413
++ + K++ +H NP + L E+V TS+ T E +SV + + K
Sbjct: 96 SKFTDGLINKERCLIVHPVNPPLFLPLTELVPAPWTSQDTVDRAAEIMRSVKQEPVKLKK 155
Query: 412 DTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAG 290
+ GFVVNRL + E RL G D+D M G G
Sbjct: 156 EVLGFVVNRLQFALLAETWRLVADGVIGVNDVDAVMSAGLG 196
>AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical
protein Y71F9B.9b protein.
Length = 281
Score = 75.4 bits (177), Expect = 4e-14
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = -3
Query: 769 NDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSI 590
+++L R++T T E K+A + E+ +E++ + + +K +D +A TI AS+TS++
Sbjct: 36 DEALLRVSTTTSLNEVMKNAIYMQESALEDLNFRIQFYKVIDEIADPTTILASSTSTIPA 95
Query: 589 NEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCITCK- 413
++ + K++ +H NP + L E+V TS+ T E +SV + + K
Sbjct: 96 SKFTDGLINKERCLIVHPVNPPLFLPLTELVPAPWTSQDTVDRAAEIMRSVKQEPVKLKK 155
Query: 412 DTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAG 290
+ GFVVNRL + E RL G D+D M G G
Sbjct: 156 EVLGFVVNRLQFALLAETWRLVADGVIGVNDVDAVMSAGLG 196
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -3
Query: 691 IVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDK 554
++E +E++ L L+ +PS F + S+S+ ++ S+ + +DK
Sbjct: 12 LMERMELQELLIVSLESKSPSQAAFGAPFGSMSVADLGSLTRLEDK 57
>AL110499-2|CAB57913.1| 297|Caenorhabditis elegans Hypothetical
protein Y62F5A.1b protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 736 DAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVK 566
D ++KSADLVV I + L L+ V HT A + + +E A +VK
Sbjct: 145 DGERSAKSADLVVRQIAAYNKNIEGLINHLNSVDRMHTEAAIEKPTYNRDETAKIVK 201
>AL110499-1|CAB57912.1| 325|Caenorhabditis elegans Hypothetical
protein Y62F5A.1a protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 736 DAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVK 566
D ++KSADLVV I + L L+ V HT A + + +E A +VK
Sbjct: 145 DGERSAKSADLVVRQIAAYNKNIEGLINHLNSVDRMHTEAAIEKPTYNRDETAKIVK 201
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 492 PLTTSSKRITGTGLKK*RPPNLSFLFTTDA-ISFIDREDVFDAKIV 626
P T +++TG LKK RP + SF + DA I +D + KIV
Sbjct: 487 PTTCEPQQVTGRFLKKQRPASASFSCSLDANIDDVDPHALQVPKIV 532
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 492 PLTTSSKRITGTGLKK*RPPNLSFLFTTDA-ISFIDREDVFDAKIV 626
P T +++TG LKK RP + SF + DA I +D + KIV
Sbjct: 487 PTTCEPQQVTGRFLKKQRPASASFSCSLDANIDDVDPHALQVPKIV 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,806
Number of Sequences: 27780
Number of extensions: 355646
Number of successful extensions: 818
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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