Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n03f
         (599 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117748-1|AAD38334.1|  365|Anopheles gambiae serine protease 14...    29   0.15 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   3.3  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   10.0 

>AF117748-1|AAD38334.1|  365|Anopheles gambiae serine protease 14A
           protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 382 EGEKFVNDSLGRINTATDAAEASKSAD 462
           EGE+ VN  LG  NTATD   A  + D
Sbjct: 167 EGERLVNVRLGEYNTATDTDCADGNPD 193


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = +1

Query: 301 DALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAI 480
           +A+   K+ +   L +          Q     +ND + R+N     A  S+ +  V +  
Sbjct: 768 EAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDEIRRLNQENKEAFTSRMSLEVTKNK 827

Query: 481 VENIEVKHKLFKQLD 525
           +EN+ + + LF++ D
Sbjct: 828 LENL-LTNNLFRRKD 841


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 416 LPSESFTNFSPSW 378
           LPS++FT  +P W
Sbjct: 794 LPSDTFTKLTPIW 806


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,621
Number of Sequences: 2352
Number of extensions: 11110
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)