Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n01r
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   215   1e-56
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   0.96 
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   3.9  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   6.8  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   6.8  
U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    26   9.0  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    26   9.0  
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    26   9.0  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  215 bits (524), Expect = 1e-56
 Identities = 103/124 (83%), Positives = 114/124 (91%), Gaps = 1/124 (0%)
 Frame = -2

Query: 371 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 191 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKH 15
           IVVNLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120

Query: 14  LEEK 3
           L  K
Sbjct: 121 LGGK 124


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 359  NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 186
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 185  VN 180
            +N
Sbjct: 886  LN 887


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 156 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 302
           ++V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 14  SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
          protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -1

Query: 87 TTVWL-PSPYNKWW 49
          T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 218 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 99
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 9   LQVFSSGFFMVHDATTCCK 65
           L+VFS+GFFM  D  + C+
Sbjct: 139 LKVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 9   LQVFSSGFFMVHDATTCCK 65
           L+VFS+GFFM  D  + C+
Sbjct: 139 LKVFSNGFFMTFDKLSSCQ 157


>U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical
           protein C26B9.6 protein.
          Length = 306

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 55  LVVRTR*PNCREGSRLVHLSISL-MGTSK---RGEMTPHLFSLPVRF 183
           L + TR  NC      V L  +  MG      RG+++P LFS+P+R+
Sbjct: 114 LTIPTRIENCGHEFCYVCLKSNFAMGNDCPVCRGKISPSLFSMPIRY 160


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 398 LRSAS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 234
           L  A  I  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 491 LTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 398 LRSAS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 234
           L  A  I  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 491 LTEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 139 RGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 234
           +G+     + LP RF+T+L AL   T+ NS M
Sbjct: 321 KGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,745,938
Number of Sequences: 27780
Number of extensions: 162654
Number of successful extensions: 388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)