Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11n01r
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   9.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 195 ASSVIINDFKLSDVTVLHHH 254
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 305 FSLAFQHYV*ILRRHSIRSYAPWLRF 382
           F LAF   + +  ++ I     WLRF
Sbjct: 56  FGLAFVQLINVNEKNQIMKSNVWLRF 81


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 118 ILKDGLICSPHDSL 77
           +L DGL+C   DS+
Sbjct: 70  LLSDGLMCVEKDSI 83


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 9   LQVFSSGFFMVHDATTC 59
           L VFS G F++ D   C
Sbjct: 598 LMVFSLGLFLLLDMFNC 614


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 404 GSLRSAS*ILAMVRMNVLSDALKSIHNAEKRGKR 303
           GS+  A  I+ ++ +        SI NAE+RG R
Sbjct: 198 GSVAIAIAIVELIGIICALCLANSIKNAERRGYR 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,290
Number of Sequences: 438
Number of extensions: 1889
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)