Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11n01f
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 222 9e-59
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 210 3e-55
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 134 4e-32
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
11_01_0526 - 4140853-4141017,4141416-4141619 28 3.1
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 7.3
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 27 9.6
07_01_0802 - 6287180-6287605 27 9.6
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 27 9.6
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 222 bits (543), Expect = 9e-59
Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
Frame = +2
Query: 35 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 214
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 215 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 391
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 392 LGGKILGFFF 421
+GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 210 bits (514), Expect = 3e-55
Identities = 99/126 (78%), Positives = 113/126 (89%), Gaps = 1/126 (0%)
Frame = +2
Query: 35 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 214
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 215 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 391
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 392 LGGKIL 409
+GGK L
Sbjct: 121 VGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 134 bits (323), Expect = 4e-32
Identities = 58/124 (46%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = +2
Query: 50 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 229
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 230 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 406
GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Query: 407 LGFF 418
LG+F
Sbjct: 125 LGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 191 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 292
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 209 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 304
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 209 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 304
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 158 MKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 298
+++G+ +I D +R K + +LTG++ +C + FD + + E+
Sbjct: 25 LQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKEDEK 71
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 9.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 202 QSWQDCCKSHRQTKQVWC 255
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 134 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 298
++K LT ++ IG +EI +HR K+ L G L CGV +F + I++
Sbjct: 583 VIKVLTELLDQLDIGTYEIKLNHR--KL---LDGMLEICGVPPEKFRTVCSSIDK 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,177
Number of Sequences: 37544
Number of extensions: 217346
Number of successful extensions: 439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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