Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m24r
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.50 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.66 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.66 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.66 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.87 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.87 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 403 YLYNTYYFISFLFGLLKIHIF*FQISIFTTVHII 504
           +L   YYF+  LF LL I+ F     IF TVH++
Sbjct: 129 FLLCIYYFVVPLFFLLCIYYFYCAFIIF-TVHLL 161



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 403 YLYNTYYFISFLFGLLKIHIF*FQISIFTTVHII 504
           +L  TYYF      LL ++ F +   IF TVH++
Sbjct: 96  FLLCTYYFYYAFIILLCVYYFYYAFIIF-TVHLL 128


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 IVATNLKNNLLITNSWPNC--NIFYIKFGECDF 257
           I+  + KN +L TN+W N   N + +K+ E ++
Sbjct: 40  IIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY 72


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 IVATNLKNNLLITNSWPNC--NIFYIKFGECDF 257
           I+  + KN +L TN+W N   N + +K+ E ++
Sbjct: 40  IIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY 72


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 IVATNLKNNLLITNSWPNC--NIFYIKFGECDF 257
           I+  + KN +L TN+W N   N + +K+ E ++
Sbjct: 40  IIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY 72


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 IVATNLKNNLLITNSWPNC--NIFYIKFGECDF 257
           I+  + KN LLITN W +   N + +K+ E ++
Sbjct: 40  IIDVDEKNQLLITNIWLSLEWNDYNLKWNESEY 72


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 IVATNLKNNLLITNSWPNC--NIFYIKFGECDF 257
           I+  + KN LLITN W +   N + +K+ E ++
Sbjct: 40  IIDVDEKNQLLITNIWLSLEWNDYNLKWNESEY 72


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 329 IVQIWRLGLDKFIKNDLLVIKKKFKVTFPKFD 234
           I+QIW  G D  ++N   ++   ++V    +D
Sbjct: 442 IIQIWTTGSDPQVRN---LLDNGYRVILSNYD 470


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,991
Number of Sequences: 336
Number of extensions: 3769
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)