Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m24r
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       37   0.015
05_04_0310 + 20114415-20117819                                         28   9.3  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 735 VCLCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAI 556
           V LC  C++L+   A C  Y   L   P        +C    C + V  + +AG+++ A+
Sbjct: 161 VLLCTECLSLVRSAAVCS-YCLSLDNLPPEDSSVTCRC----CNRCVHPYCIAGEHRAAL 215

Query: 555 LLSRPVRNIICV 520
           +    V N ICV
Sbjct: 216 IQPIDVENFICV 227


>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 572  FPANENDYTSLVQTLLMHLRGSLHTAEGVSPSSFE*ILQVAPSPSKVTQAGHK 730
            FPAN N  TSL +  +M+  G L +     PSS + +  +   P+ ++Q  +K
Sbjct: 1066 FPANFNSLTSLRKLSIMNCTG-LESLPSGFPSSLQVVHLIGCKPTLLSQLQNK 1117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,886
Number of Sequences: 37544
Number of extensions: 304859
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)