Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m24r
         (760 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   1.9  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    25   2.5  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   7.7  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   7.7  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    23   7.7  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    23   7.7  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    23   7.7  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 518 RTQIIFRTGRDRSIASLYFPANENDYTSLVQTLLMHLRGS 637
           R +   + G+    A L   A EN+     Q +L HLRGS
Sbjct: 353 RLEKAIKVGKRAEFAKLIDIAEENELGVGYQVVLSHLRGS 392


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 732 CLCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKC 622
           C CP  + L   G TCK +  +L    S VC    +C
Sbjct: 24  CACPIGIQLKDNGKTCKSWPLQL----SGVCCTVPRC 56


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 VK*HNIVATNLKNNLLITNSW 212
           +K   ++  NLKN ++ TN W
Sbjct: 59  LKLSQLIDVNLKNQIMTTNLW 79


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 VK*HNIVATNLKNNLLITNSW 212
           +K   ++  NLKN ++ TN W
Sbjct: 59  LKLSQLIDVNLKNQIMTTNLW 79


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 VK*HNIVATNLKNNLLITNSW 212
           +K   ++  NLKN ++ TN W
Sbjct: 55  LKLSQLIDVNLKNQIMTTNLW 75


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 IVATNLKNNLLITNSW--PNCNIFYIKFGECDF 257
           ++  NLKN ++ TN W     N + +K+   D+
Sbjct: 60  LIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDY 92


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 592 LHKLSANSFDAFERLLTHSG 651
           LH LSA S D F+R +  SG
Sbjct: 368 LHLLSALSRDLFQRAILQSG 387


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 592 LHKLSANSFDAFERLLTHSG 651
           LH LSA S D F+R +  SG
Sbjct: 368 LHLLSALSRDLFQRAILQSG 387


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 592 LHKLSANSFDAFERLLTHSG 651
           LH LSA S D F+R +  SG
Sbjct: 254 LHLLSALSRDLFQRAILQSG 273


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,704
Number of Sequences: 2352
Number of extensions: 14505
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)