Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m24r
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    29   2.7  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 154 NNIISSQLI*KIIYL*RTVGQIVISSISNLGNVTLNFFF 270
           N++ S   I    ++  +V Q+V++S+SNL +  L+FFF
Sbjct: 543 NHLTSLVSISSSFFINLSVTQLVVNSVSNLSSEPLSFFF 581


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 527 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMH 625
           ++FR+ R R  ++  FP  ++ Y+++V+T ++H
Sbjct: 47  VVFRSNRQRDRSTPIFPIIKHFYSTVVRTYILH 79


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 717 CVTLLGEGATCKIYSKELGETPSAVCKE 634
           CV   G+G+T  ++S  +G+  SA+C E
Sbjct: 137 CVWGQGDGSTMPVFSTSVGKIGSAICWE 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,090,362
Number of Sequences: 27780
Number of extensions: 326426
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)