Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m22r
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 29 3.1
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 29 3.1
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 29 4.1
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 29 4.1
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 29 5.4
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 5.4
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 28 7.2
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 28 9.5
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 249 LNIVL*RHKIFSYLIYESIYFDFITKTKYAWYLYTVFF 136
L VL + ++ ++Y I F++ K K+ WYLY ++F
Sbjct: 1341 LPYVLVQSAVYGVIVYAMIGFEWEAK-KFFWYLYFMYF 1377
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 222 IFSYLIYESIYFDFITKTKYAWYLYTVFF 136
I+S ++Y I F + T K+ WYL+ +FF
Sbjct: 1290 IYSIIVYSMIGFQW-TVAKFFWYLFFMFF 1317
>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 249 LNIVL*RHKIFSYLIYESIYFDFITKTKYAWYLYTVFF 136
L +L + I+ L+Y I F++ T K+ WYL+ ++F
Sbjct: 1176 LPYILVQSLIYGVLVYAMIGFEW-TAAKFFWYLFFMYF 1212
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 135 LPCDEFPISFLTSLYFCRNVKVQYCEIL 52
LPC E P + + Y C+N+KV+Y +++
Sbjct: 149 LPCTEAPTAL--TFYSCKNLKVEYLKVV 174
>01_05_0662 - 24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 222 IFSYLIYESIYFDFITKTKYAWYLYTVFF 136
I+ L+Y I F++ T K+ WYL+ ++F
Sbjct: 1286 IYGVLVYSMIGFEW-TVAKFLWYLFFMYF 1313
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 249 LNIVL*RHKIFSYLIYESIYFDFITKTKYAWYLYTVFF 136
L +L + ++ L+Y I F++ T K+ WYL+ ++F
Sbjct: 1252 LPYILVQTLVYGVLVYSMIGFEW-TVAKFIWYLFFMYF 1288
>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 222 IFSYLIYESIYFDFITKTKYAWYLYTVFF 136
++ ++Y I FD+ T K+ WY++ +FF
Sbjct: 1287 VYGLIVYSLIGFDW-TVEKFFWYMFFMFF 1314
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 222 IFSYLIYESIYFDFITKTKYAWYLYTVFF 136
I+ ++Y I F + T K+ WYL+ +FF
Sbjct: 1288 IYGIIVYSMIGFKW-TAAKFFWYLFFMFF 1315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,179
Number of Sequences: 37544
Number of extensions: 285920
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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