Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m22r
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    31   0.91 
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    29   2.8  
U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AY849796-1|AAW34234.1|  517|Caenorhabditis elegans acetylcholine...    28   8.5  

>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 282 ILNRRM*SVGCLNIVL*RHKIFSYLIYESIYFDFITKTKYAWYLYTVFFLPCDEFPISFL 103
           +L+ R   VG    ++  H I+ YL  ++     +T+  + WY+    F     F +  L
Sbjct: 91  LLSARCSLVGTTFALILVHFIYRYLAIQN---SSLTRNNFHWYMTGSIFASVFHFSVWHL 147

Query: 102 TSLYFCR 82
           T LYF R
Sbjct: 148 TCLYFTR 154


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 207 IYESIYFDFITKTKYAWYLYTVFFLPCDEFPISFLTSLYF 88
           IY   +  FITKT+Y +  + +F LP     +  + ++YF
Sbjct: 248 IYICTFISFITKTEYTFSQFFIFVLPSLTTVVDPVITMYF 287


>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 282 ILNRRM*SVGCLNIVL*RHKIFSYLIYESIYFDFITKTKYAWYLYTVFFLPCDEFPISFL 103
           +L+ R   VG    ++  H ++ YL  ++     +T+  + WY+    F+    F I  L
Sbjct: 91  LLSARCSLVGATFALILVHFVYRYLAIQN---SSLTRENFHWYMTGSIFVSVFHFSIWHL 147

Query: 102 TSLYF 88
           T +YF
Sbjct: 148 TCMYF 152


>U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical
           protein F55D10.5 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = -1

Query: 231 RHKIFSYLIYESIYFDFITKTKYAWYLYTVFFLPCDEFPISFLTSLYFCRNVKV 70
           +H+I+   ++  +   F+   +Y WY++   ++P   +   F++ + FC   K+
Sbjct: 252 KHEIYPAGVWNELTMTFVFSRRYGWYIFQA-YIP--TYLTIFISWISFCLGPKM 302


>AY849796-1|AAW34234.1|  517|Caenorhabditis elegans
           acetylcholine-gated chloride channelsubunit ACC-3
           protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = -1

Query: 231 RHKIFSYLIYESIYFDFITKTKYAWYLYTVFFLPCDEFPISFLTSLYFCRNVKV 70
           +H+I+   ++  +   F+   +Y WY++   ++P   +   F++ + FC   K+
Sbjct: 252 KHEIYPAGVWNELTMTFVFSRRYGWYIFQA-YIP--TYLTIFISWISFCLGPKM 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,985
Number of Sequences: 27780
Number of extensions: 329405
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)