Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m22f
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   9e-26
SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   7e-24
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              31   1.0  
SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      31   1.0  
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       30   1.8  
SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)                    29   3.2  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   3.2  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)          28   7.3  
SB_50637| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)                   27   9.7  
SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.7  

>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score =  113 bits (273), Expect = 9e-26
 Identities = 61/131 (46%), Positives = 83/131 (63%), Gaps = 4/131 (3%)
 Frame = +1

Query: 64  YGNKILTASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL 243
           +G  +      N     Q  R+L+VHE+ S  +L+D GI  PK  VA+T ++A + AT L
Sbjct: 19  HGKLLARVLGPNVIAQHQPRRNLSVHEHHSMKILQDAGILTPKGGVARTAEQAYEIATVL 78

Query: 244 NTK----DIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTG 411
                  D+V+KAQVLAGGRGKG F+ GLKGGVR+V + + A ++A +M+ + L TKQTG
Sbjct: 79  GESEVEGDMVVKAQVLAGGRGKGKFEGGLKGGVRIVFSADEAKEVASRMIGKKLFTKQTG 138

Query: 412 AAGRICNMVMV 444
             GRICN V V
Sbjct: 139 ELGRICNEVFV 149


>SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score =  107 bits (257), Expect = 7e-24
 Identities = 54/115 (46%), Positives = 72/115 (62%)
 Frame = +1

Query: 238 ELNTKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAA 417
           +++  + V+KAQ+LAGGRGKGTF +GL GGV +    +  G    KM    L TKQT   
Sbjct: 30  QVDAAEYVIKAQILAGGRGKGTFDSGLNGGVHLTKLADEVGYFTAKMFGYRLKTKQTPPE 89

Query: 418 GRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVXIEDVAAENPDAI 582
           G +   VMV E     RE Y+AI+M+R F GPVI+AS +GG+ IE+VA   P+ I
Sbjct: 90  GVMVTRVMVAEAYDIERETYLAILMDREFMGPVIVASPKGGMDIEEVAKTTPEYI 144


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
 Frame = -1

Query: 461 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 291
           GNF S T  ++          V  S  SI P   I+      +T+  P  S P+     P
Sbjct: 55  GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANITMILPSTSVPYNTTLIP 114

Query: 290 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCTF--KWR 123
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T      
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTTVIATPN 172

Query: 122 TCCLLGNLLAEDAVNI 75
           T  L+ + ++   VN+
Sbjct: 173 TTRLVTSTISSSTVNV 188


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 451 RKFPRREYYVAIM-MERSFNGPVIIASSQGGVXIEDVAAENPD 576
           R+F + E Y+A    ERS+  P I+ +S G    E+   + PD
Sbjct: 330 RRFEKSEPYMAWQGTERSYGSPAIVQASYGSTPYENENGQKPD 372


>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 362 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL 210
           S A +   T   PP    L  P+PR P  TCA   +  +  +V+   A SL
Sbjct: 162 SEAETATKTETPPPWLRLLPAPYPRTPTTTCALVPVGTINITVSENNARSL 212


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 398 VTRS-CLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLI 222
           VTRS C S FP  +P+T  V T  +  ++        RPPA+  + R  +  L++ A  +
Sbjct: 201 VTRSDCCSAFPIRTPSTCSVCTWHSSNIA--------RPPAQPSSLRERTRTLATTATHM 252

Query: 221 ASSLVLATLNLGTG 180
            S +    L++  G
Sbjct: 253 MSYIACTKLHVKRG 266


>SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)
          Length = 158

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 36/102 (35%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = -1

Query: 416 AAPVCFVTRSCLSIFPAISPATSGVLTIR-TPPLSPFLKVPFPRPPARTCAFRTMSLV-L 243
           AA V FV+R C S+     P    V   R +  L P  K      P        +  V L
Sbjct: 50  AAVVSFVSRCCRSV--KCDPDVKLVSLQRISGGLGPKHKFVMKSAPVGDGIASCIECVTL 107

Query: 242 SSVANLIASSLVLATLNLGTGIPWSRSRV*LMYSCTFKWRTC 117
            SVAN     L LAT + G  I  + SR   MYS  FKW  C
Sbjct: 108 KSVAN----GLYLATTDTGA-ISMTTSRK--MYSAFFKWEVC 142


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
 Frame = -1

Query: 461 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 291
           GNF S T  ++          V  S  SI P   I+       T+  P  S P+     P
Sbjct: 55  GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANSTMILPSTSVPYNTTLIP 114

Query: 290 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCTF--KWR 123
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T      
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTTVIATPN 172

Query: 122 TCCLLGNLLAEDAVNI 75
           T  L+ + ++   VN+
Sbjct: 173 TTRLVTSTISSSTVNV 188


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 366 SRKDA*TTPSNKTNRGSRTNLQHGHGHREEVPTQGILRGNYDGTQFQWSSHHCFIS 533
           SRK     PS  T R       HG G  +++P + I R N     F  SS  CF S
Sbjct: 719 SRKRRLAVPSTPTKR-------HGSGRFKDLPPRKIRRDNSSHDSFSSSSSCCFSS 767


>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
          Length = 532

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 297 FPSTTSKNLCF*NDVFGIEFCGK 229
           +P T   ++C   ++ G E+CGK
Sbjct: 111 YPQTWQNHICMRTEIIGCEYCGK 133


>SB_50637| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
          Length = 309

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -1

Query: 422 RPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVL 243
           RP +      R+ L + P   PA +    I  PP +   + P   PP  T +  T+ +++
Sbjct: 17  RPRSARLQARRTGLMVDPP--PAVNNTEEIVAPPSAVNNREPTVIPPHATLSPDTLEMII 74

Query: 242 SSVANLIASSLV 207
           S+V   +  +L+
Sbjct: 75  STVTTRVTDALI 86


>SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 660

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 202 PH*IWVQEFHGPVVEYNLCIHVHSSGGLV 116
           PH +  QE H P+   ++ IH HS  G +
Sbjct: 374 PHHVMRQELHPPITARHVRIHPHSWNGSI 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,514
Number of Sequences: 59808
Number of extensions: 428009
Number of successful extensions: 1173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)