Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m22f
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 171 4e-43
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 135 3e-32
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 4.9
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 4.9
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 4.9
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 4.9
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 4.9
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 4.9
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 27 8.5
U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 27 8.5
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 27 8.5
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 27 8.5
AC024798-9|AAK29918.2| 640|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 171 bits (416), Expect = 4e-43
Identities = 86/167 (51%), Positives = 114/167 (68%)
Frame = +1
Query: 124 RHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGT 303
R L +HE+ +L+++ I VP F VA+ + A A + KD V+KAQVLAGGRGKG
Sbjct: 22 RTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGR 81
Query: 304 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYYVA 483
F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV +R F RREYY +
Sbjct: 82 FSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMVCKRLFTRREYYFS 141
Query: 484 IMMERSFNGPVIIASSQGGVXIEDVAAENPDAITYEPIDIVSGITDD 624
I ++R+ NGP++IASSQGGV IE+VAA NPDAI PID+ GIT +
Sbjct: 142 ITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKE 188
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 135 bits (326), Expect = 3e-32
Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 2/183 (1%)
Frame = +1
Query: 85 ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVL 264
A + +K K Q R LN+ E+ S +L HG V F VA + EA + + V+
Sbjct: 5 AGNLSKSMMKSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVV 64
Query: 265 KAQVLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMV 438
KAQ+LAGGRGKG F NG KG GV + + A + +M+ + LVTKQT + G + V
Sbjct: 65 KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKV 124
Query: 439 MVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVXIEDVAAENPDAITYEPIDIVSGIT 618
M+ E +RE Y+A++M+R NGPV++AS GG+ IE VA + P+ I PIDI G+T
Sbjct: 125 MIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMT 184
Query: 619 DDQ 627
+ Q
Sbjct: 185 EGQ 187
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 395 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 252
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 395 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 252
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 99 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 395 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 252
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 395 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 252
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 395 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 252
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 395 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 252
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 538 GVXIEDVAAENPDAITYEP 594
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox
protein 1 protein.
Length = 132
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 428 QIRPAAPVCFVTR-SCLSIFPAISPATSGVLTIRTPPLSPF 309
QI+P P +T S L + P ISPA S VL + PL+ F
Sbjct: 78 QIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLF 118
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 538 GVXIEDVAAENPDAITYEP 594
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 538 GVXIEDVAAENPDAITYEP 594
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AC024798-9|AAK29918.2| 640|Caenorhabditis elegans Hypothetical
protein Y48G9A.3 protein.
Length = 640
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 137 TFKWRTCCLLGNLLAEDAVNI 75
T KW CL GN AE+AV I
Sbjct: 134 TMKWLLACLDGNSCAENAVEI 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,594
Number of Sequences: 27780
Number of extensions: 322127
Number of successful extensions: 900
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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