Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m21r
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finge...    34   3.6  

>UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 607

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
 Frame = -3

Query: 661 LLLLCGLYIAVVAAA-FPSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAVVHVFKPTEK 485
           +LLL  L+I ++    F S T   E+ DV+    N+ + + + +  + DA+V V + + +
Sbjct: 68  ILLLPVLFIVMLPGLIFGSLT---EQSDVL----NSNSMISENIRASRDAIVEVLEESHE 120

Query: 484 SVIDKMADSVKSLTQ*PV*LISTPYNY----NSNIVVDELC--RWDHQILLINRNKHILD 323
            ++ ++  ++  L Q     I+ PY Y    N+N+++ + C  + D++ + +N+ K ++ 
Sbjct: 121 DILAEIHAAISRLPQGDTASINDPYTYSISVNANLLISQFCASQDDYKNINLNQLKKLIR 180

Query: 322 QN 317
           +N
Sbjct: 181 EN 182


>UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finger
           protein 709; n=1; Equus caballus|Rep: PREDICTED: similar
           to zinc finger protein 709 - Equus caballus
          Length = 1224

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 638 YRCCGSSFSIRNEEYRET*CH-GIHEECLERSREDPKRCWRCGRSRIQANRKECH 477
           YR CG  F   +  Y    CH G+  +  +   E P +C +CGR+ I  +  + H
Sbjct: 115 YRACGKVFMRHSPLYGHIRCHTGLKPDEYQTDGEKPYKCKKCGRTFIYHHTFQRH 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,048,327
Number of Sequences: 1657284
Number of extensions: 11996125
Number of successful extensions: 26267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26260
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)