Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m21f
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0153 + 18635495-18636952,18637262-18637333,18637448-186375...    28   5.1  
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400...    27   8.9  
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936...    27   8.9  

>01_05_0153 +
           18635495-18636952,18637262-18637333,18637448-18637595,
           18637690-18637871
          Length = 619

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 158 PSETRNIEKRDVMESMKNAWNEVVKTLSDAGDAV 259
           P ET N  + +++E+  N  +++V T  + G+A+
Sbjct: 298 PDETENRSQEEIVEASLNVLHKLVSTTGETGEAL 331


>02_04_0485 + 23338980-23339187,23339277-23339305,23339962-23340064,
            23340311-23340482,23340880-23340940,23341257-23341389,
            23341938-23342208,23342595-23342734,23342912-23342998,
            23343078-23343586,23343671-23344488,23344522-23344720,
            23345552-23345696,23345728-23345782,23347652-23347778,
            23347867-23347936,23348448-23348553,23348636-23348747,
            23349243-23349365,23349468-23349627,23349751-23349827,
            23349925-23349977,23350151-23350205,23350500-23351174
          Length = 1495

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 202  HEECLERSRE-DPKRCWRCGR 261
            H+  + +  E DPK+CW CG+
Sbjct: 1425 HQVAVRQQEEFDPKKCWICGK 1445


>02_04_0482 + 23291986-23292181,23292289-23292317,23293500-23293602,
            23293855-23293979,23294788-23294920,23295468-23295739,
            23295806-23295873,23296126-23296265,23296443-23296529,
            23296610-23297118,23297203-23298020,23298054-23298252,
            23299084-23299228,23299260-23299314,23301184-23301310,
            23301399-23301468,23301980-23302085,23302168-23302279,
            23302775-23302897,23303000-23303159,23303283-23303359,
            23303457-23303509,23303683-23303737,23304032-23304706
          Length = 1478

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 202  HEECLERSRE-DPKRCWRCGR 261
            H+  + +  E DPK+CW CG+
Sbjct: 1408 HQVAVRQQEEFDPKKCWICGK 1428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,832
Number of Sequences: 37544
Number of extensions: 285242
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)