Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m20f
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    91   1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.062
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   1.3  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   1.8  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    27   1.8  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.3  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.1  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   7.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.3  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 52/82 (63%)
 Frame = +1

Query: 112 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 291
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + 
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89

Query: 292 TPTSLEMEEGDTIEVYQQQTGG 357
           TP  L+ME+GD IE   +Q GG
Sbjct: 90  TPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 196 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 336
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 605 EVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRV 426
           + T +  + Y L   K FET N      M+  V    P T TD   ++ KL  G    RV
Sbjct: 17  KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERV 75

Query: 425 HL---IDFDPLEMVN 390
           HL   +D++ L   N
Sbjct: 76  HLNTTLDYEVLRGQN 90


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 610 LLKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 461
           L+ L  A GI+II+ L   +LR+  +     C Y+++ +F  L    M ++
Sbjct: 334 LISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 5   FYAFVCENRYQISLSIHSFVLIVSRTTLISKWLMKRREKTN 127
           FY F   N +Q +LSI      +++ T I +W MK+  + N
Sbjct: 192 FYRFNQRNNFQ-TLSIDEAEAKMNKKTPIPRWFMKKESEEN 231


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 580 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 491
           L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 39  LLIVVITLY-RRIVECCASLCSLIFSKYYL 67


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 418  LILTHWRWSILKIIKFTLGTLLR 350
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 210 HQFPERCVFLYFELYNCV 157
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 177  FELYNCVILT*YFQINVFVFSLLFI 103
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 210 HQFPERCVFLYFELYNCV 157
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 56  SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 169
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 85  INLKM---ADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 228
           IN+K    A + K ++ HI +   G+ NA+V+ KI K   ++  +   CD+
Sbjct: 158 INIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  SIHSFVLIVSRTTLISKWLMKRREKTNTL 133
           +++ FV++V    L S W+M +  KT  L
Sbjct: 496 AVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,872
Number of Sequences: 5004
Number of extensions: 47678
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)