Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m18r
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    26   0.27 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.84 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    25   0.84 
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    25   0.84 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.8  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 9   LTFAYLLIVNILKFSK--ICKTSILKLC 86
           +TF +L ++NIL+  K  +C  S++ LC
Sbjct: 247 VTFVHLAVLNILRVGKNFVCLLSLIILC 274


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 340 ICSEGLTVHIKGSIVFINLILITSSLLVMFFL 245
           I   G   ++ GSIVF+   L+  +L  +FFL
Sbjct: 208 ITQYGPEEYVDGSIVFVCFSLVEDTLPCVFFL 239


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 301 IVFINLILITSSLLVMFFLLISVGFRLSYY 212
           I+F NL LIT SL V+ +  + +G  L+ Y
Sbjct: 169 IIFHNLTLITYSLCVISW-AVGIGIMLAQY 197


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 301 IVFINLILITSSLLVMFFLLISVGFRLSYY 212
           I+F NL LIT SL V+ +  + +G  L+ Y
Sbjct: 169 IIFHNLTLITYSLCVISW-AVGIGIMLAQY 197


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 649 RFLKRLTLQP*LLVACVLNTAAGYDLS 569
           RFL ++T+    +V   L+T+ GY LS
Sbjct: 156 RFLIKVTILHPNIVKLKLDTSEGYTLS 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,428
Number of Sequences: 336
Number of extensions: 3714
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)