Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m18r
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 325 LTVHIKGSIVFINLILITSSLLVMFFLLISVGFR 224
           LTV + G  +   ++L+T S++V   +L +V FR
Sbjct: 294 LTVPLLGKYLLFTMVLVTLSVVVTIAVL-NVNFR 326


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 231  DSDYPIIPAHPI 196
            DSD P+ P HPI
Sbjct: 984  DSDLPVEPTHPI 995


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 454 VTTN-YNTINTEVSFYYLFTVPFINILYYD*NIIPENITE 570
           VT N Y +  T  S YY+   PF+   Y + NI  E I +
Sbjct: 262 VTNNLYYSPLTSHSLYYVNMEPFMKSQYEENNIEYEGIQD 301


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 511 VPFINILYYD*NIIPENITETGRN 582
           VP I + Y   NI+P NI+  G+N
Sbjct: 42  VPSIYLTYAK-NILPNNISIAGQN 64


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 371 KSDICYSPIKNMFRRVNRPHQRQYRFY 291
           KS I  + + +     N PHQ++ RF+
Sbjct: 337 KSTIVRNHLNSTCSVTNSPHQKKLRFH 363


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 57  ICKTSILKLCAI 92
           +C  SIL LCAI
Sbjct: 121 LCTASILSLCAI 132


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 103 NLFIFLSFHNLIR 141
           N FIFL F++L+R
Sbjct: 20  NYFIFLYFNSLVR 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,834
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)