Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m18f
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 33 0.031
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.67
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 29 0.67
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 2.7
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 3.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 3.6
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 26 3.6
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 26 3.6
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 4.7
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 6.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 6.2
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 8.3
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 33.1 bits (72), Expect = 0.031
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +3
Query: 291 RRNECLDNLAKLERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENM--R 464
+R E D L +E +FT LR +LY +++ ++ ++ + + + + E R
Sbjct: 304 KRKEAFDALLNIETEFTFLRNRLYGKKLLKLNEHEEMIQNETHERFNACIDLITERRDDR 363
Query: 465 IRIEVAGILKQM-RIENI 515
+R+ ++KQ+ I+N+
Sbjct: 364 VRLATENLMKQLGNIKNV 381
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 369 RVKQVEYQLAEVRGGRSQEYLGPLRRLQENMR 464
R++++E+QL + GR ++ LG RLQ+ +R
Sbjct: 1056 RLREMEFQLKAEQEGRKRDKLGARERLQDLIR 1087
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 28.7 bits (61), Expect = 0.67
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 395 GRSEGWSLPGISRSTSKTAGEYENQNRSSRHTQANEDREHKT 520
G ++ W RSTSK N S+++ R+HKT
Sbjct: 419 GSTQEWHSHTTPRSTSKHENNLNNITNSAKNEHIRSQRQHKT 460
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 29 ILQFTNWSENTIHYKIKINS 88
+L+F WS+ HYK+ +NS
Sbjct: 239 LLEFEFWSQAAQHYKLDVNS 258
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 3.6
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = -1
Query: 575 PLFTLEMLVCCLFFSLKLVFYVLDPHLLEYAGYFDSDSHILLQSSKWTEIFLGATTPHFG 396
PL + ++C F S+ L+F+++ P +L Y G + S+ +L SS + + +
Sbjct: 399 PLASPWWVICNTFGSVVLIFWIVVP-ILYYKGVWFSNYLPMLSSSTFDHTGVSYNSSRVL 457
Query: 395 QLIFNLLHSLYVQLFSKHSELSLKFC*VIETFVS-ASLTLAFVH 267
++ H+ Y +S L + + T ++ A++T F H
Sbjct: 458 NSDYSFNHTKY----ESYSPLYMPMSYSMSTALNFAAVTAIFTH 497
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/51 (17%), Positives = 27/51 (52%)
Frame = +3
Query: 405 RGGRSQEYLGPLRRLQENMRIRIEVAGILKQMRIENIKHKFEAEEQAAHQH 557
RG R ++ GP+ +++N+R++ ++ + + + + K + + + H
Sbjct: 213 RGRRKRKMRGPILPVKKNLRVKKAMSPLRAERNSPDFRRKLRSRDNRPNYH 263
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -3
Query: 438 VDRDIPGSDHPSLRPVDIQLASLSLRTIVLEAQ*TVSQVLLSYRDIRFCVSHTRL 274
++ DI + P+ QLASL+ I + Q V +D +FC H L
Sbjct: 256 INWDIENAIQKYFNPLIEQLASLAKLNIETQIQYFVEDAEAYIKDDKFCTKHADL 310
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 287 LTLAFVHFRRIVGVRLVSFLSARVPVWATGRAPRSFGITPRHFSISITIAF 135
LT+ F F +G+ VS +AR+P R SF +H S+ + F
Sbjct: 54 LTIVFSAFASFLGLYFVSQCAARLP-----RGKASFAAVAKHTFPSLAVVF 99
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 4.7
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = -1
Query: 467 DSHILLQSSKWTEIFLGATTPHFG--QLIFNLLHSLYVQLFSKHSELSLKFC*VIETFVS 294
DS +++ + + I + + +++ ++ Y +L ELS F +IE +
Sbjct: 386 DSSVIISEATFVNIITKVSRAYSKCLKVLLGIIAPNYTRLLELDRELSNFFKELIEVNIP 445
Query: 293 ASLTLAFVHFRRIVGVRLVSFLSARVPV 210
S T+ H R LVS+LS R P+
Sbjct: 446 TSNTMHERHIR-----LLVSYLSNRFPI 468
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 324 VLLSYRDIRFCVSHTRLRPFPKNR 253
V+L Y RFC+S LRP +R
Sbjct: 17 VILFYAKNRFCISIDHLRPLKSHR 40
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 491 EYAGYFDSDSH-ILLQSSKWTEIFLGATTPHFGQLIFNLLHSLYVQLFSKHSELSLK 324
++ G FD D H + + S + PH LL LY +F+K+ E SLK
Sbjct: 223 KFFGIFDWDPHGLCIYSCFKYGSNAYSHEPHSQLRNLQLLGPLYEDIFNKNQEFSLK 279
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 6.2
Identities = 27/118 (22%), Positives = 48/118 (40%)
Frame = -1
Query: 569 FTLEMLVCCLFFSLKLVFYVLDPHLLEYAGYFDSDSHILLQSSKWTEIFLGATTPHFGQL 390
+ L +L F S+K + +LD + +L + + G + Q
Sbjct: 956 YQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQE 1015
Query: 389 IFNLLHSLYVQLFSKHSELSLKFC*VIETFVSASLTLAFVHFRRIVGVRLVSFLSARV 216
++ LLH + LF H+E S F IE+ ++ L +R+ + L F+ RV
Sbjct: 1016 LWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMI-LKPFMLRRV 1072
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 590 ILVRQPLFTLEMLVCCLFFSLKLVFYVLDPHLLEYAG 480
+ VRQ LF + + F + L+ DP L Y G
Sbjct: 305 VAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHG 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,610
Number of Sequences: 5004
Number of extensions: 41527
Number of successful extensions: 151
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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