Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m18f
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 32 0.39
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 30 1.2
08_02_1110 + 24371934-24374763,24375034-24375518 30 1.6
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253... 29 2.1
10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308 29 3.7
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995... 29 3.7
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 28 4.8
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 28 6.4
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180... 28 6.4
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 28 6.4
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 8.5
01_05_0446 - 22334291-22334751,22335304-22336191,22336290-223365... 27 8.5
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 136 KAIVMEMEKCL--GVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTKASVRDAETNV 306
K V+++ C G+IP +LG + L+ +LT PT L TK S E+N+
Sbjct: 352 KLTVLDLSSCKLSGIIPLELGKMTQLNILHLSFNRLTGPFPTSLGNLTKLSFLGLESNL 410
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/86 (18%), Positives = 44/86 (51%)
Frame = +3
Query: 327 ERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMRIRIEVAGILKQMRI 506
++Q ++++Q ++ +Q++ QL + + + Q+YL + + Q+NM + ++ +Q
Sbjct: 1050 QQQMYLMQQQQMYQQQQQLQQQLLQQQLLQQQQYLSQMPQQQQNMTQQQQLFQQQQQQLF 1109
Query: 507 ENIKHKFEAEEQAAHQHFKSEKWLAY 584
+ + + +Q Q F ++ Y
Sbjct: 1110 QQQQQQMVVLQQQQQQQFIQQQMQQY 1135
>08_02_1110 + 24371934-24374763,24375034-24375518
Length = 1104
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 142 IVMEMEKCLGVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTKASVRDAETN 303
I + + + G IP+ G LP Q L+ KLT + P L T + + + N
Sbjct: 325 IDLSLNELTGPIPRSFGGLPNLQQLQLSTNKLTGVIPPELSNCTSLTDIEVDNN 378
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 136 KAIVMEMEKCLGVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTK 276
K +V+ G IPK+LG L T L +LT P L + K
Sbjct: 106 KTLVLSGTNLTGAIPKELGDLAELSTLDLTKNQLTGAIPAELCRLRK 152
>06_03_0598 +
22621765-22624795,22624903-22625066,22625290-22625328,
22625479-22625487
Length = 1080
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 136 KAIVMEMEKCLGVIPKDLGALPVAQTGTLALRKLTSLTPTIL 261
K I + K G+IP D G LP Q LA +LT P L
Sbjct: 175 KDIDLSKNKLKGMIPSDFGNLPKMQIIVLASNRLTGDIPPSL 216
>10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308
Length = 735
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 342 VLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMRIRIEVAGILKQMRIENIKH 521
VL+E + ++ + LAE +G E L P + NM++ +E+ +L++ E+I
Sbjct: 307 VLQELITKKKAASLAQALAEGKG--VTELLDPKICNESNMKVLVEIGKLLQECLTEDIHR 364
Query: 522 KFEAEEQAAH 551
+ + + A H
Sbjct: 365 RPDMCDLAGH 374
>02_02_0412 -
9950286-9950380,9950530-9951203,9951402-9951580,
9952578-9952633,9953233-9953262,9953820-9953982
Length = 398
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 166 LGVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTKASVRDAETNVSIT 315
L P G P + LA +K LTP+ W +A+V A T+ + T
Sbjct: 4 LSTPPATAGVSPSPRPSLLAYKKAAGLTPSPWCGWRRAAVATAATSSNRT 53
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 465 FSYSPAVFEVDRDIPGSDHPSLRPVDIQLASLSLRT 358
FSY A+ V + G DHPS+ V ++LA L RT
Sbjct: 318 FSYQKAL-TVLKSARGDDHPSVASVFVRLADLYHRT 352
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +1
Query: 154 MEKCLGVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTKASVRDAETNVSIT*QNLRD 333
++ C+ +P + A+P + L+ + + + +++K TKA R + +T N +
Sbjct: 469 IKDCIPQVPDETRAIPGVKNDMLSTKVVDNQKDELMKKATKAKGRRVVNSTELTSMNSKT 528
Query: 334 SS 339
+S
Sbjct: 529 NS 530
>06_02_0101 -
11816507-11816878,11817571-11817840,11818014-11818076,
11818610-11819002
Length = 365
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 410 TPHFGQLIFNLLHSLYVQLFSKHSE 336
T HFG+ I + L +YV L +KH E
Sbjct: 324 TDHFGESIVDELFQVYVPLVAKHLE 348
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 474 EVAGILKQMRIENIKHKFEAEEQAAHQ 554
E+ G L+ M +EN+ K EA E HQ
Sbjct: 902 ELGGNLRVMNLENVSGKDEASESKLHQ 928
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 130 KWKAIVMEMEKCLGVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTKASVRDAETNV 306
K + + K G+IP +LG L L+ +LT PT L TK S+ + N+
Sbjct: 343 KLTVLDLSYSKLSGMIPLELGKLIQLNILHLSANQLTGPFPTSLGNLTKLSLLALDRNL 401
>01_05_0446 -
22334291-22334751,22335304-22336191,22336290-22336550,
22337129-22337588
Length = 689
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 169 GVIPKDLGALPVAQTGTLALRKLTSLTPTILRKWTKASVRDAETN 303
G IP ++ A+P Q L +LT PT L + +V + ++N
Sbjct: 140 GPIPPEIAAMPSLQVVQLCYNQLTGGVPTQLGLLKRLTVLELQSN 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,459,967
Number of Sequences: 37544
Number of extensions: 248949
Number of successful extensions: 827
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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