Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m18f
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related... 32 0.35
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 32 0.35
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 32 0.35
U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 7.5
U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 27 10.0
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 27 10.0
AF106583-6|AAD03137.1| 233|Caenorhabditis elegans Hypothetical ... 27 10.0
>U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related
family protein 1 protein.
Length = 956
Score = 31.9 bits (69), Expect = 0.35
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = -1
Query: 554 LVCCLFFSLKLVFYVLDPHLLEYAGYFDSDSHILLQSSKWTEIFLGATTPHFGQLIFNLL 375
++ C+ FS+ L ++ Y G + + L++ W +FLGA++ G L+ L+
Sbjct: 833 VIMCIGFSVDLSAHIAYAFSQSY-GNSHARAVAALETLGWP-VFLGASSTVLGILLLTLV 890
Query: 374 HSLYVQLFSKHSELSLKF 321
S VQ+F K L + F
Sbjct: 891 DSYIVQIFFKTVFLVINF 908
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 31.9 bits (69), Expect = 0.35
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 291 RRNECLDNLAK-LERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMR- 464
+R E LD + K LE Q+ L ER++ + Q E R + QEY R MR
Sbjct: 331 QRVEALDEIVKHLEYQWAELSHMKDFERIRFRKNQTEEYRALKIQEYPETPRNPHFYMRH 390
Query: 465 -IRIEVAGILKQMR 503
+ I+V G++++ R
Sbjct: 391 ALDIDVIGVMREFR 404
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 31.9 bits (69), Expect = 0.35
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 291 RRNECLDNLAK-LERQFTVLREQLYVERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMR- 464
+R E LD + K LE Q+ L ER++ + Q E R + QEY R MR
Sbjct: 331 QRVEALDEIVKHLEYQWAELSHMKDFERIRFRKNQTEEYRALKIQEYPETPRNPHFYMRH 390
Query: 465 -IRIEVAGILKQMR 503
+ I+V G++++ R
Sbjct: 391 ALDIDVIGVMREFR 404
>U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical
protein F59C12.3 protein.
Length = 519
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 363 VERVKQVEYQLAEVRGGRSQEYLGPLRRLQENMRIR--IEVAGILKQMRIE 509
+ +++Q+EY A + + EYL R+ QEN+ + I++ +K++ IE
Sbjct: 155 LSKLQQIEYSYARLE--KEYEYLANERKKQENLELNVIIQLEKSVKKLTIE 203
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 27.5 bits (58), Expect = 7.5
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +3
Query: 321 KLERQFTVLREQLYVERVKQVEYQLAEVRGGRSQ--EYLGPLRRLQENMRIRIEVAGILK 494
K ER+ EQL +R++++E +L E G + Q L L+ E + + ++
Sbjct: 278 KSEREAAKTLEQLLEKRIEELEMKLTEPNGEKLQFEHQLEELKSRCEELTDKALKVDVM- 336
Query: 495 QMRIENIKHKF----EAEEQAAHQHFKSEK 572
Q IE+ + KF E +E+A Q K+++
Sbjct: 337 QHSIEDYEKKFVELQEMKEEADEQLQKAKE 366
>U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical
protein R13A1.10 protein.
Length = 226
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 275 FVHFRRIVGVRLVSFLSARVPVWATGRAPR 186
F HFR +GV ++ F S+ +P+W P+
Sbjct: 58 FKHFRSAIGVEIIEFESS-LPMWLVHLNPK 86
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -1
Query: 497 LLEYAGYFDSDSHILLQS-----SKWTEIFLGATTPHFGQLIFN 381
LLE G D D H L+ S + + +F+G +TPH I N
Sbjct: 768 LLEDDGLEDDDDHELISSFSSSSTNYPPLFIGTSTPHTQNPITN 811
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -1
Query: 497 LLEYAGYFDSDSHILLQS-----SKWTEIFLGATTPHFGQLIFN 381
LLE G D D H L+ S + + +F+G +TPH I N
Sbjct: 768 LLEDDGLEDDDDHELISSFSSSSTNYPPLFIGTSTPHTQNPITN 811
>AF106583-6|AAD03137.1| 233|Caenorhabditis elegans Hypothetical
protein F23C8.9 protein.
Length = 233
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 453 ENMRIRIEVAGILKQMRIENIKHKF-EAEEQAAHQHFKSEK 572
E++ R+E G +Q+++ IKH+ E E + H+ +++K
Sbjct: 109 EDVLNRVETLGTRRQVKVFMIKHRLGETGEDSEHEEQENQK 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,736
Number of Sequences: 27780
Number of extensions: 229321
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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