Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m17f
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 259 3e-70
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 259 3e-70
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 259 3e-70
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 139 4e-34
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.59
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 4.2
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 4.2
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 5.5
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.3
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 259 bits (634), Expect = 3e-70
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +1
Query: 103 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 282
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 283 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 462
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 463 MPKDIQLARRIRGERA 510
PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 259 bits (634), Expect = 3e-70
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +1
Query: 103 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 282
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 283 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 462
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 463 MPKDIQLARRIRGERA 510
PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 259 bits (634), Expect = 3e-70
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +1
Query: 103 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 282
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 283 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 462
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 463 MPKDIQLARRIRGERA 510
PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 139 bits (336), Expect = 4e-34
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 10/118 (8%)
Frame = +1
Query: 178 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 339
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 340 --KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 501
TD LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.59
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 208 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 369
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 370 IGALQEASEAYLVGLFE 420
+ A E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 471 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 295
LR+ T + + + QA LE S + Q+ SFEIL +TLE
Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132
Query: 294 TDKQLSR 274
++ +SR
Sbjct: 133 SNPNISR 139
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 432 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 256
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 98 KQWLVLNKQPVNLLEVKLRVNNLLQ 172
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 244 ALREIRRYQKSTELLIRKLPFQR 312
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 387 LLESSDGGRLETQISFEILSD 325
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,900
Number of Sequences: 5004
Number of extensions: 44882
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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