Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m14r
(702 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 24 1.4
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 23 1.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.2
AY531877-1|AAT08872.1| 247|Tribolium castaneum ORF1p protein. 22 5.6
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 22 5.6
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 22 5.6
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 22 5.6
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 22 5.6
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 22 5.6
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 22 5.6
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.4
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.4
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.4
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 23.8 bits (49), Expect = 1.4
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 595 TAYDRSKNVVYLGGQDGIYKFNHATKSAKNLRITNYSIRQMFHSPT-HGLFFTTFNPEEK 419
T ++ K V+ L G++ NH + + L T S + ++ S T G F K
Sbjct: 23 TTHNCLKKVLLLSQIVGVFPLNHLNEEPEKLHFTFKSWKVLYTSLTSFGYLFCASLSFYK 82
Query: 418 AF 413
AF
Sbjct: 83 AF 84
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 23.4 bits (48), Expect = 1.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 111 PKIVSLSSTLKTSSNIPP 164
P++ S + T++T S IPP
Sbjct: 737 PRVESFAETVRTVSKIPP 754
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 480 GKCFIVPPTVFSSRLSI 430
G C VPP +F S I
Sbjct: 114 GSCLYVPPGIFKSTCKI 130
>AY531877-1|AAT08872.1| 247|Tribolium castaneum ORF1p protein.
Length = 247
Score = 21.8 bits (44), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 180 KIAFGVEKYNLSSKSL 227
KI G +YNL+SKSL
Sbjct: 184 KINTGKTQYNLNSKSL 199
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 608 IDAGYFSELF---SVKVQVSGFKNCFP 679
I A YF+ +F + K+ + GF FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 608 IDAGYFSELF---SVKVQVSGFKNCFP 679
I A YF+ +F + K+ + GF FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.8 bits (44), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 608 IDAGYFSELF---SVKVQVSGFKNCFP 679
I A YF+ +F + K+ + GF FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.8 bits (44), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 608 IDAGYFSELF---SVKVQVSGFKNCFP 679
I A YF+ +F + K+ + GF FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 21.8 bits (44), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 325 IYFANSAGIFVLTNINGVLFKVHLHVIPVNGFA 227
IYF + NINGVLF ++ N FA
Sbjct: 432 IYFGQDLNQDGVMNINGVLFVFLTNMTFQNVFA 464
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 21.8 bits (44), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 325 IYFANSAGIFVLTNINGVLFKVHLHVIPVNGFA 227
IYF + NINGVLF ++ N FA
Sbjct: 432 IYFGQDLNQDGVMNINGVLFVFLTNMTFQNVFA 464
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 480 GKCFIVPPTVFSS 442
G C VPP +F S
Sbjct: 114 GSCLYVPPGIFKS 126
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 480 GKCFIVPPTVFSS 442
G C VPP +F S
Sbjct: 114 GSCLYVPPGIFKS 126
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 480 GKCFIVPPTVFSS 442
G C VPP +F S
Sbjct: 114 GSCLYVPPGIFKS 126
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 480 GKCFIVPPTVFSS 442
G C VPP +F S
Sbjct: 114 GSCLYVPPGIFKS 126
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,352
Number of Sequences: 336
Number of extensions: 3547
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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