Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m14r
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   3.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    26   4.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   6.0  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   6.0  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   6.0  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   7.9  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.9  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 90  PSAVKASPKIVSLSSTLKTSSNIPPFSLMKKIAFGVEKYNLSSKSLANPLTG 245
           PSAV ++  I S+SST+ +S +   F+ +    F     + ++ S A P +G
Sbjct: 141 PSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTVLSSTNTTS-ALPSSG 191


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 153 NIPPFSLMKKIAFGVEKYNLSSKSLANPLTGITC 254
           N+P  S  KK++ GV+  NL++ S+ + +  I C
Sbjct: 82  NLPKASKKKKVSLGVQDKNLAT-SIKSEIDAIEC 114


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 691 FLFEGKTVLKSAYLNLNTKEFGEISGINSGVATAYDRSKNVVYLGGQ 551
           FL +GK+V K   L     E  +   + SG+  A    +N+V+LG Q
Sbjct: 383 FLLDGKSV-KGLSLQALDLEIND-DFLKSGITCAVPAGENLVFLGSQ 427


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 126 LSSTLKTSSNIPPFSLMKKIAFGVEKYNLSSKSLANPLTGITCKCTL 266
           LS T + S  I    LMKK+A   +  + SSK ++ P   I  +C L
Sbjct: 464 LSPTEEESRPITRDELMKKLARSEDISDNSSKLVSEPEPPIRSRCAL 510


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 289 TNINGVLFKVHLHVIPVNGFASDFDDRLYFSTPNAIFFINENGGILEEVF-RVEES 125
           + + G L+ +    IP+  F +  D +   +    +F +  +  ILE +F  +EES
Sbjct: 195 SKLQGCLYTIFNLKIPLEMFDTSLDSKFLSNVKTKVFNMKASTEILESLFTSIEES 250


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 282 IFVSTKMPAELAKYILYFLLSAIKLVLMSVSSGTI 386
           +F+   M   ++    YFLLS + L + S+S G I
Sbjct: 159 LFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRI 193


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 482 YAVICDTQILCRFRCVI 532
           Y V+C   +LCR  C++
Sbjct: 34  YCVVCFVSVLCRLYCIL 50


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -3

Query: 319 FANSAGIFVLTNINGVLFKVHL---HVIPVNGFASDFDDRLYFSTPN 188
           +    GI++  NING++   H     ++ V  FAS   D  Y +  N
Sbjct: 608 YCTMKGIYIYYNINGLVLIEHFPISSILNVKQFASTKCDYFYMNIQN 654


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 117 IVSLSSTLKTSSNIPPFSLMKKIAFGVEKYNLSSKSLANPLTGI 248
           ++S  +   TS++ PP +    +  G +K+N  +  +A P+ G+
Sbjct: 63  VISTQNPEPTSASTPPSASASSLPNGAQKHN-HTGVIAGPIVGV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,653
Number of Sequences: 5004
Number of extensions: 59477
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)