Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m14r
(702 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.9
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 4.9
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 4.9
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 4.9
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 4.9
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 4.9
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 4.9
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 4.9
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 4.9
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 4.9
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 4.9
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 4.9
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 4.9
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 22 4.9
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.9
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 22 4.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.5
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 8.6
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSSRLSI 430
+T G C VPP +F S I
Sbjct: 93 VTHDGSCLYVPPGIFKSTCKI 113
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSSRLSI 430
+T G C VPP +F S I
Sbjct: 93 VTHDGSCLYVPPGIFKSTCKI 113
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSSRLSI 430
+T G C VPP +F S I
Sbjct: 93 VTHDGSCLYVPPGIFGSTCKI 113
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSSRLSI 430
+T G C VPP +F S I
Sbjct: 93 VTHNGSCLYVPPGIFKSTCKI 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSSRLSI 430
+T G C VPP +F S I
Sbjct: 161 VTHNGSCLYVPPGIFKSTCKI 181
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSSRLSI 430
+T G C VPP +F S I
Sbjct: 161 VTHNGSCLYVPPGIFKSTCKI 181
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSS 442
+T G C VPP +F S
Sbjct: 93 VTHDGSCLYVPPGIFKS 109
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 492 ITA*GKCFIVPPTVFSS 442
+T G C VPP +F S
Sbjct: 93 VTHDGSCLYVPPGIFKS 109
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 162 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 194
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 162 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 194
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 162 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 194
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIEKSGN 205
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.2 bits (45), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
IF E +L ++ ++EE +T+L + GN
Sbjct: 173 IFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 22.2 bits (45), Expect = 4.9
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -1
Query: 150 KKSSGWKKVK 121
KKSSGW+K++
Sbjct: 129 KKSSGWRKLR 138
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 6.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 480 GKCFIVPPTVFSSRLSI 430
G C VPP +F S I
Sbjct: 134 GTCLYVPPGIFKSTCKI 150
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 8.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 184 IFFINENGGILEEVFRVEESETILGLAFTADGN 86
+F E +L ++ ++EE +T+L + GN
Sbjct: 173 LFEREEIKNVLTKINKIEEHDTVLVVNIKKSGN 205
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,203
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 33
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -