Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m14f
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   1.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   2.2  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   2.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   5.1  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.1  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.8  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   8.8  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   8.8  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 132 VVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINSGVATAYDRSKNVVYLGG 311
           VV   T+  FF    L +GK+V K   L     E  +   + SG+  A    +N+V+LG 
Sbjct: 369 VVLVHTSGQFFYLDFLLDGKSV-KGLSLQALDLEIND-DFLKSGITCAVPAGENLVFLGS 426

Query: 312 Q 314
           Q
Sbjct: 427 Q 427


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 75  HGNQEVEVLKDNVHNASQLVVDYQTNT-LFFSHSSLFEGKTVLKSAYLNLNTKEFGEISG 251
           H    ++V++  V + ++ V  Y  N  L F   S   GKT L S+++N NT      + 
Sbjct: 396 HNTDALKVMRKRV-SQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV 454

Query: 252 INS 260
           +NS
Sbjct: 455 VNS 457


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 36  MKLIILITIIAFVHGNQEVEVLKDNVHNASQLVVDYQTNTLFFSHSSLF 182
           ++L+  ++IIA +HGN+E+ V   ++   + L +D + +      SS F
Sbjct: 408 IQLLTPVSIIASLHGNKEIGV--QDIEECNDLFLDARRSAQVVKSSSGF 454


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 99  LKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLN--LNTKEFGEISGINSGVAT 272
           ++DN  +  +L   Y TN L      L + + VL    ++     K F +    N+GV T
Sbjct: 482 VEDNTLSPEELSRTYVTNELSSPEQVLQKARRVLAEEIIHDPQFRKSFRD-KLYNAGVVT 540

Query: 273 AYDRSKNVVYLGGQDGIYKFNH 338
                K V  +G +   Y+F +
Sbjct: 541 VLATQKGVRKIGSEHPYYEFKY 562


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 583 IFVSTKMPAELAKYILYFLLSAIKLVLMSVSSGTI 479
           +F+   M   ++    YFLLS + L + S+S G I
Sbjct: 159 LFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRI 193


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 383 YAVICDTQILCRFRCVI 333
           Y V+C   +LCR  C++
Sbjct: 34  YCVVCFVSVLCRLYCIL 50


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 544 ILLIPLASLC*QISMESCSKYIYMLF 621
           ++L+P+  LC  I   +CS Y  +LF
Sbjct: 69  VMLLPIFLLCRCICKSNCSPYPILLF 94


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 610 KCTLNKTPLIFVSTKMPAELAKYIL-YFLLS 521
           +C L + PLIF +      L +YIL YF ++
Sbjct: 68  ECQLTQRPLIFQTADFDPSLLQYILNYFQMA 98


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 159 FFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINSGVATAYDRSKNV 296
           + S S L+  +  L + YL +NT   G  +GI++ V    D  KN+
Sbjct: 167 YCSQSGLY--RKPLTTNYLTVNTSVSGICTGISNAVDAYRDYVKNI 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,992
Number of Sequences: 5004
Number of extensions: 55523
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)