Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m14f
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    30   1.3  
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    28   5.2  

>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 335 IKFIYPILSTKVHNVFASIICSSYARI 255
           I F YP+  T +H VF+S++C +  +I
Sbjct: 110 INFPYPVALTLLHMVFSSVVCFAITKI 136


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 282 RSKNVVYLGGQDGIYKFNHATKSAKNLRITNYSIRQM 392
           R+ NV+Y     G+Y F H  K AKN +  N  IRQ+
Sbjct: 457 RNVNVLY-DSSKGLYAFMHPLKEAKNEKNAN-GIRQL 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,835
Number of Sequences: 37544
Number of extensions: 303374
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)