Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m14f
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   30   1.3  
SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.3  
SB_10001| Best HMM Match : Astacin (HMM E-Value=0)                     28   5.3  
SB_43562| Best HMM Match : Oxidored_q2 (HMM E-Value=3.5)               27   9.3  

>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
 Frame = +3

Query: 105 DNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINSGVATAYDR 284
           + ++N +  +V+ QT+ +     + +E   +  ++ +    K   EI      V   YD+
Sbjct: 609 EELYNEAYTMVNTQTDKVVKKAKAEYERIVMKATSGIKKLNKTLMEIK---KDVVAVYDQ 665

Query: 285 SKNVVYLGGQDGIYKFNHATKSAKN------LRITNYSI 383
           +KNV  + G+  I  F+   K+A+N      +RI N SI
Sbjct: 666 TKNVTIISGKQLIAIFHPYAKTAQNKTMIMIIRIRNASI 704


>SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 331 NLYIPSCPPRYTTFLLLSYAVATPELMPDISPNSLVLRFK 212
           NLY+P  PP   +F  LS AV  P   P+      ++R+K
Sbjct: 39  NLYLPPLPPGVKSFTTLSQAVEPPR--PEYERRGSLMRWK 76


>SB_970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 428 FQS*RKSVCLLLRSSRRYCT*TDRHQNKFNCRQQKIQY 541
           FQ  RK +C LLR      T +DRH+ K + +QQ+  +
Sbjct: 269 FQGDRKRICELLRE---LATDSDRHKAKKDLKQQRASF 303


>SB_10001| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 397

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 66  AFVHGNQEVEVL--KDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFG 239
           A VHGN E+EV+   +N   A+  ++        F  S+L+EG  +L      ++ ++ G
Sbjct: 95  ADVHGNHEIEVVIKPENETTATDEIIHVNQVEDAFG-SNLYEGDIMLSGE--QVDWRDAG 151

Query: 240 EISGINSGVATAYDR 284
           ++ G N    TA  R
Sbjct: 152 DVDGGNDVNMTASKR 166


>SB_43562| Best HMM Match : Oxidored_q2 (HMM E-Value=3.5)
          Length = 128

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
 Frame = -2

Query: 470 LTVGVDKRFFFRIESREEKTVGGTMKHLPYAVI----------CDTQILCRFRCVIKFIY 321
           LT  ++   F  I SR ++    T     Y ++          C T ++  +   I  IY
Sbjct: 23  LTALIENSLFINIVSRNQRMKNATNYATNYLIVNLAVSELVTVCTTMVMTFY---IALIY 79

Query: 320 PILSTKVHNVFASIICSSYARIDAGYFSELFSVKVQVSGFKNCFPFEQ 177
           P     ++ VFA++IC  +      +   L  + + V  F   F   Q
Sbjct: 80  PKRMDYLNQVFATVICKFFIAFLDVFCHSLAMLSLTVIAFDRFFGVRQ 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,903,101
Number of Sequences: 59808
Number of extensions: 379745
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)