Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m14f
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39651-6|AAL11483.1| 286|Caenorhabditis elegans Temporarily ass... 29 2.0
U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily ass... 29 2.0
Z78198-8|CAB01574.2| 333|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 29 3.5
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 29 3.5
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 28 6.2
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 8.2
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 8.2
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 8.2
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U39651-6|AAL11483.1| 286|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform b protein.
Length = 286
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 315 DGIYKFNHATKSAKNLRITNYSIRQMFHSPTHGLFFT 425
DG+ K + T N I +Y+ +F SPT LF T
Sbjct: 245 DGLLKIGNRTFVDMNALINHYTTSPIFSSPTEKLFLT 281
>U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform a protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 315 DGIYKFNHATKSAKNLRITNYSIRQMFHSPTHGLFFT 425
DG+ K + T N I +Y+ +F SPT LF T
Sbjct: 354 DGLLKIGNRTFVDMNALINHYTTSPIFSSPTEKLFLT 390
>Z78198-8|CAB01574.2| 333|Caenorhabditis elegans Hypothetical
protein F55C5.9 protein.
Length = 333
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 392 HLPYAVICDTQILCRFRCVIKFIYPILSTKVHNVFASIICSSYARIDAGYF 240
HLPY ++ T IL F F++ +LS + SII Y R A F
Sbjct: 74 HLPYPLLRATGILAEFGFSGLFLFYVLSAFIIQTSFSIIEMFYFRYKASVF 124
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 349 DFVA*LNLYIPSCPPRYTTFLLLSYAVATPELMPDISPNSL 227
D +A +P PP+YT F L+Y + P++ SL
Sbjct: 304 DAIATQRARLPLAPPKYTVFKRLTYLICEEAYEPELPDVSL 344
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 480 IVPELTDIKTSLIADSKKYNIYFANSAGIFVLTN 581
I+P + D++ S++ +SK YN Y A S G +N
Sbjct: 176 IMPPMEDVQESIVKESKTYN-YAAASGGSLPFSN 208
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 180 FEGKTVLKSAYLNLNTKEFGE-ISGINSG-VATAYDRSKNVVYLGGQDG 320
++G V +Y+NL E I G + G + R NV+Y+GG DG
Sbjct: 31 YKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGVDG 79
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 1998 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2041
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2289 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2332
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2304 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2347
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2108 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2151
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 1998 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2041
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2289 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2332
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2304 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2347
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2108 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2151
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 90 VEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 221
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 464 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,070
Number of Sequences: 27780
Number of extensions: 305703
Number of successful extensions: 904
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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