Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m14f
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 7.3
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 7.3
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSSRLSI 435
+T G C VPP +F S I
Sbjct: 93 VTHDGSCLYVPPGIFKSTCKI 113
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSSRLSI 435
+T G C VPP +F S I
Sbjct: 93 VTHDGSCLYVPPGIFKSTCKI 113
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSSRLSI 435
+T G C VPP +F S I
Sbjct: 93 VTHDGSCLYVPPGIFGSTCKI 113
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSSRLSI 435
+T G C VPP +F S I
Sbjct: 93 VTHNGSCLYVPPGIFKSTCKI 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSSRLSI 435
+T G C VPP +F S I
Sbjct: 161 VTHNGSCLYVPPGIFKSTCKI 181
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSSRLSI 435
+T G C VPP +F S I
Sbjct: 161 VTHNGSCLYVPPGIFKSTCKI 181
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSS 423
+T G C VPP +F S
Sbjct: 93 VTHDGSCLYVPPGIFKS 109
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 373 ITA*GKCFIVPPTVFSS 423
+T G C VPP +F S
Sbjct: 93 VTHDGSCLYVPPGIFKS 109
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 385 GKCFIVPPTVFSSRLSI 435
G C VPP +F S I
Sbjct: 134 GTCLYVPPGIFKSTCKI 150
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 36 MKLIILITIIAFVHGNQEVEVLKDN-VHNASQLVVDYQTN 152
++ IILI HGN + + L D+ + N ++L+ N
Sbjct: 3 LQTIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNN 42
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 81 NQEVEVLKDNV 113
NQE E++KDN+
Sbjct: 208 NQEYEIMKDNL 218
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,729
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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