Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m12r
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    87   8e-18
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    30   0.98 
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   3.9  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    28   3.9  
Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   9.1  

>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 86.6 bits (205), Expect = 8e-18
 Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
 Frame = -3

Query: 405 THAQKVCSLYKRALRNLEAYYDRRHV-YRYQAVLLRERFDKHAKETNMIKANXXXXXXXX 229
           +H QKV  LYKR LR ++ +Y   ++  R+Q  ++R RFD +A E +  K+         
Sbjct: 13  SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72

Query: 228 XXXXKQHPIPKYFATSPGGVAHERVVTPPDWVLD--YWHPLEKAQYPEYFKKREQRKKEF 55
               K+H  P  FA  PGG +++R    PD ++D   W   E+ Q+P YF  REQRKKE 
Sbjct: 73  QLWEKRHFKPFRFALDPGGSSYDRERESPDEIVDSDQWTLAEREQFPYYFNTREQRKKEL 132

Query: 54  VAMWEK 37
           +  W K
Sbjct: 133 LTHWAK 138


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 414 GVKTHAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMI 262
           G    A K C+ Y  AL  LE   +  H+++  A  L ER+    K T  I
Sbjct: 151 GTHVEASKACNEYNAALTGLETENETYHIWK-TAYSLVERYPSQPKITERI 200


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 112  KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 201
            +R   V D   G+D+T M  + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 112  KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 201
            +R   V D   G+D+T M  + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 306  TIQLGIGTHVGGRSTLLNYVKPFYKGYRLF 395
            TI + I T+  G+S +LN+V  F  GYR F
Sbjct: 1276 TINVAI-TYENGKSDVLNFVGDFLDGYRHF 1304


>Z50016-14|CAI06050.2|  177|Caenorhabditis elegans Hypothetical
           protein T21C12.8 protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 109 ESPIS*IFQETRAKKERVRCYVGEGVWQAR*ER 11
           ++PIS +F  TR       C+   GVW+ R +R
Sbjct: 16  KAPISAVFCPTRGSSTAPNCFAIIGVWRRRKKR 48


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 129 DYWHPLEKAQYPEYFKKREQRKKE 58
           DYW  L K   PE  ++  QRK E
Sbjct: 427 DYWETLNKIWVPEISRQLHQRKLE 450


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 129 DYWHPLEKAQYPEYFKKREQRKKE 58
           DYW  L K   PE  ++  QRK E
Sbjct: 427 DYWETLNKIWVPEISRQLHQRKLE 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,638
Number of Sequences: 27780
Number of extensions: 206109
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)